Sequencing degraded RNA addressed by 3' tag counting. (Q35121637)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24632678%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

title

Sequencing degraded RNA addressed by 3' tag counting (English)

1 reference

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10 March 2020

1

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10 March 2020

author name string

Olof Emanuelsson

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24632678%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Joakim Lundeberg

series ordinal

3

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10 March 2020

language of work or name

English

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publication date

14 March 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24632678%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24632678%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

volume

9

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10 March 2020

issue

3

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10 March 2020

page(s)

e91851

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Creative Commons Attribution 4.0 International

10 March 2020

copyright license

start time

14 March 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

DESeq2

object named as

R package DESeq

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

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cites work

Comparative analysis of RNA sequencing methods for degraded or low-input samples

1 reference

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Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Landscape of transcription in human cells

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Selective depletion of rRNA enables whole transcriptome profiling of archival fixed tissue

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

RSeQC: quality control of RNA-seq experiments

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Quantification of RNA integrity and its use for measurement of transcript number

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

A quantitative atlas of polyadenylation in five mammals

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Modeling RNA degradation for RNA-Seq with applications

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

A multiplex RNA-seq strategy to profile poly(A+) RNA: application to analysis of transcription response and 3' end formation.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Improving RNA-Seq expression estimates by correcting for fragment bias

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Genomewide characterization of non-polyadenylated RNAs

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Defining the transcriptome and proteome in three functionally different human cell lines

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Differential expression analysis for sequence count data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Impact of RNA degradation on gene expression profiling.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Independent filtering increases detection power for high-throughput experiments

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Increased throughput by parallelization of library preparation for massive sequencing

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

3'-end sequencing for expression quantification (3SEQ) from archival tumor samples

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

TopHat: discovering splice junctions with RNA-Seq

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Mapping and quantifying mammalian transcriptomes by RNA-Seq

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

The RIN: an RNA integrity number for assigning integrity values to RNA measurements

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3954844

10.1371/JOURNAL.PONE.0091851

27 September 2018

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24632678%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

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release_frbwqmtxrbacbn3o7mbdenlba4

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/frbwqmtxrbacbn3o7mbdenlba4

mapped directly with Wikidata item

24 November 2022

based on heuristic

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24632678%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

PubMed publication ID

24632678

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24632678%20AND%20SRC:MED&resulttype=core&format=json