Solution structures of DEAD-box RNA chaperones reveal conformational changes and nucleic acid tethering by a basic tail (Q35134012)

6 August 2017

Solution structures of DEAD-box RNA chaperones reveal conformational changes and nucleic acid tethering by a basic tail (English)

1 reference

6 August 2017

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CYT-19 DEAD-box protein

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author name string

Anna L Mallam

1

1 reference

6 August 2017

Inga Jarmoskaite

2

1 reference

6 August 2017

Pilar Tijerina

3

1 reference

6 August 2017

Mark Del Campo

4

1 reference

6 August 2017

Soenke Seifert

5

1 reference

6 August 2017

Liang Guo

6

1 reference

6 August 2017

Rick Russell

7

1 reference

6 August 2017

Alan M Lambowitz

8

1 reference

6 August 2017

language of work or name

English

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publication date

11 July 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

6 August 2017

1 reference

6 August 2017

108

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6 August 2017

30

1 reference

6 August 2017

12254-12259

1 reference

Mechanism of Mss116 ATPase reveals functional diversity of DEAD-Box proteins

6 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Phylogenetic distribution and evolutionary history of bacterial DEAD-Box proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

ATP-dependent chromatin remodeling: genetics, genomics and mechanisms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

DEAD-box proteins as RNA helicases and chaperones

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

An intrinsically disordered C terminus allows the La protein to assist the biogenesis of diverse noncoding RNA precursors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Single-molecule analysis of Mss116-mediated group II intron folding.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

RNA helicases at work: binding and rearranging

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Structure of the RNA Binding Domain of a DEAD-Box Helicase Bound to Its Ribosomal RNA Target Reveals a Novel Mode of Recognition by an RNA Recognition Motif

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Pathway of ATP utilization and duplex rRNA unwinding by the DEAD-box helicase, DbpA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Structure of the Yeast DEAD Box Protein Mss116p Reveals Two Wedges that Crimp RNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Identification of proteins associated with the yeast mitochondrial RNA polymerase by tandem affinity purification.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

RNA chaperones, RNA annealers and RNA helicases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

DEAD-box proteins unwind duplexes by local strand separation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

The Bacillus subtilis RNA helicase YxiN is distended in solution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Structural characterization of flexible proteins using small-angle X-ray scattering

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Dead-box proteins: a family affair--active and passive players in RNP-remodeling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

A DEAD-box protein alone promotes group II intron splicing and reverse splicing by acting as an RNA chaperone

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

The DEAD-box protein family of RNA helicases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Global rigid body modeling of macromolecular complexes against small-angle scattering data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Global analysis of protein expression in yeast

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Determination of domain structure of proteins from X-ray solution scattering

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

A structural model for the DEAD box helicase YxiN in solution: localization of the RNA binding domain.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

The mechanism of ATP-dependent RNA unwinding by DEAD box proteins

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Unwinding by local strand separation is critical for the function of DEAD-box proteins as RNA chaperones

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

DEAD-box proteins can completely separate an RNA duplex using a single ATP.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Function of the C-terminal domain of the DEAD-box protein Mss116p analyzed in vivo and in vitro

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Kinetic redistribution of native and misfolded RNAs by a DEAD-box chaperone

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

RNA helicases--one fold for many functions

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Probing the mechanisms of DEAD-box proteins as general RNA chaperones: the C-terminal domain of CYT-19 mediates general recognition of RNA.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145681

Small-angle scattering studies of biological macromolecules in solution

27 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109566108

CRYSOL– a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109566108

A Map of Protein-rRNA Distribution in the 70 SEscherichia coliRibosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109566108

The DEAD-box protein Ded1 unwinds RNA duplexes by a mode distinct from translocating helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1109566108

21 January 2018

Identifiers

DOI

10.1073/PNAS.1109566108

1 reference

6 August 2017

0 references

1 reference

6 August 2017

1 reference