Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes (Q35174463)

6 August 2017

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title

Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes (English)

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6 August 2017

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Josep M Casacuberta

1

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ORCID Public Data File 2021

author name string

Néstor Santiago

series ordinal

2

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6 August 2017

language of work or name

English

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publication date

1 June 2003

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6 August 2017

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6 August 2017

volume

311

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6 August 2017

page(s)

1-11

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

6 August 2017

cites work

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7 January 2021

Retrolyc1 subfamilies defined by different U3 LTR regulatory regions in the Lycopersicon genus

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7 January 2021

Epigenetic regulation of an IAP retrotransposon in the aging mouse: progressive demethylation and de-silencing of the element by its repetitive induction

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7 January 2021

Three Tnt1 subfamilies show different stress-associated patterns of expression in tobacco. Consequences for retrotransposon control and evolution in plants

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7 January 2021

Characterization of the maize Mutator transposable element MURA transposase as a DNA-binding protein

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7 January 2021

Do Plants Have a One-Way Ticket to Genomic Obesity?

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https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Tourist: a large family of small inverted repeat elements frequently associated with maize genes

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

The MITE family heartbreaker (Hbr): molecular markers in maize

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Presence of miniature inverted-repeat transposable elements (MITEs) in the genome of Arabidopsis thaliana: characterisation of the Emigrant family of elements

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Quasispecies in retrotransposons: a role for sequence variability in Tnt1 evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Sequence variability within the tobacco retrotransposon Tnt1 population.

1 reference

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7 January 2021

Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Selfish genes, the phenotype paradigm and genome evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Genome-wide distribution and potential regulatory functions of AtATE, a novel family of miniature inverted-repeat transposable elements in Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Sequence and analysis of rice chromosome 4.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Evidence that a family of miniature inverted-repeat transposable elements (MITEs) from the Arabidopsis thaliana genome has arisen from a pogo-like DNA transposon

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Mariner-like transposases are widespread and diverse in flowering plants

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Plant transposable elements: where genetics meets genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Physical arrangement of retrotransposon-related repeats in centromeric regions of wheat

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

The expression of the tobacco Tnt1 retrotransposon is linked to plant defense responses.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Two classes of short interfering RNA in RNA silencing

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Activation of tobacco retrotransposons during tissue culture.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Retrotransposons of rice: their regulation and use for genome analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Contribution of the Tos17 retrotransposon to rice functional genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutation

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Initial sequencing and analysis of the human genome

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Retrotransposon BARE-1: expression of encoded proteins and formation of virus-like particles in barley cells

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Taming of transposable elements by homology-dependent gene silencing.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

An active DNA transposon family in rice

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

LINEs mobilize SINEs in the eel through a shared 3' sequence.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

The plant MITE mPing is mobilized in anther culture

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Plant retrotransposons

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Transposon diversity in Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

An abundant LINE-like element amplified in the genome of Lilium speciosum

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Retrotransposons of the Tnt1B family are mobile in Nicotiana plumbaginifolia and can induce alternative splicing of the host gene upon insertion.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Endogenous and silencing-associated small RNAs in plants

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Retrotransposon insertion into the maize waxy gene results in tissue-specific RNA processing

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

The significance of responses of the genome to challenge

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Retroelement distributions in the human genome: variations associated with age and proximity to genes

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

The mobility of the tobacco Tnt1 retrotransposon correlates with its transcriptional activation by fungal factors

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Mobilization of a transposon in the rice genome

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Sequence evolution and copy number of Ty1-copia retrotransposons in diverse plant genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Selfish DNA: the ultimate parasite

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Drosophila telomeres: new views on chromosome evolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Pea Ty1-copia group retrotransposons: transpositional activity and use as markers to study genetic diversity in Pisum

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Phylogenetic evidence for excision of Stowaway miniature inverted-repeat transposable elements in triticeae (Poaceae).

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

The evolution of disease resistance genes

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

The paleontology of intergene retrotransposons of maize

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Nested retrotransposons in the intergenic regions of the maize genome

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Genome-wide analysis of the Emigrant family of MITEs of Arabidopsis thaliana.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1).

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Periodic DNA methylation in maize nucleosomes and demethylation by environmental stress

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Isolation and Characterization of Rice Phytochrome A Mutants

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

A 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Structural domains and matrix attachment regions along colinear chromosomal segments of maize and sorghum.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Phylogenetic analysis reveals stowaway-like elements may represent a fourth family of the IS630-Tc1-mariner superfamily

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Survey of transposable elements from rice genomic sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

RNA silencing in plants--defense and counterdefense

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Alternative splicing induced by insertion of retrotransposons into the maize waxy gene

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Transcriptional gene silencing in plants: targets, inducers and regulators

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Transgene-induced gene silencing in plants.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

The evolutionary analysis of the Tnt1 retrotransposon in Nicotiana species reveals the high variability of its regulatory sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

In vivo characterization of transcriptional regulatory sequences involved in the defence-associated expression of the tobacco retrotransposon Tnt1

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Active retrotransposons are a common feature of grass genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Envelope-class retrovirus-like elements are widespread, transcribed and spliced, and insertionally polymorphic in plants

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

The brown midrib3 (bm3) mutation in maize occurs in the gene encoding caffeic acid O-methyltransferase

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Methylation pattern of Activator transposase binding sites in maize endosperm.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Genome evolution in polyploids

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

LTR-retrotransposons and MITEs: important players in the evolution of plant genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Retrotransposons in the flanking regions of normal plant genes: a role for copia-like elements in the evolution of gene structure and expression

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Origin and evolution of retroelements based upon their reverse transcriptase sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Kiddo, a new transposable element family closely associated with rice genes

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Molecular characterization of a short interspersed repetitive element from tobacco that exhibits sequence homology to specific tRNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

P instability factor: an active maize transposon system associated with the amplification of Tourist-like MITEs and a new superfamily of transposases

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

Centromeric retroelements and satellites interact with maize kinetochore protein CENH3.

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2803%2900557-2

7 January 2021

10.1016/S0378-1119(03)00557-2

Identifiers

DOI

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6 August 2017

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