Real-time observation of strand exchange reaction with high spatiotemporal resolution (Q35186210)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21827943%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

title

Real-time observation of strand exchange reaction with high spatiotemporal resolution (English)

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9 February 2020

2

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9 February 2020

Taekjip Ha

series ordinal

3

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9 February 2020

author name string

Kaushik Ragunathan

series ordinal

1

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9 February 2020

publication date

1 August 2011

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9 February 2020

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9 February 2020

volume

19

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9 February 2020

issue

8

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9 February 2020

page(s)

1064-1073

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Single-molecule four-color FRET.

9 February 2020

cites work

1 reference

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PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps

13 July 2018

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Caught in the act: the lifetime of synaptic intermediates during the search for homology on DNA.

13 July 2018

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Direct observation of twisting steps during Rad51 polymerization on DNA.

13 July 2018

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Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes

13 July 2018

1 reference

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Structure of human Rad51 protein filament from molecular modeling and site-specific linear dichroism spectroscopy

13 July 2018

1 reference

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Dynamics of RecA filaments on single-stranded DNA

13 July 2018

1 reference

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MicroRNAs: target recognition and regulatory functions

13 July 2018

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Direct imaging of human Rad51 nucleoprotein dynamics on individual DNA molecules

13 July 2018

1 reference

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Counting RAD51 proteins disassembling from nucleoprotein filaments under tension.

13 July 2018

1 reference

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A practical guide to single-molecule FRET

13 July 2018

1 reference

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Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures

13 July 2018

1 reference

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Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase

13 July 2018

1 reference

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Molecular basis for target RNA recognition and cleavage by human RISC.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Direct observation of individual RecA filaments assembling on single DNA molecules

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Real-time observation of RecA filament dynamics with single monomer resolution.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Exchange of DNA base pairs that coincides with recognition of homology promoted by E. coli RecA protein

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Kinesin walks hand-over-hand

13 July 2018

1 reference

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Rad51 recombinase and recombination mediators

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Initiation of genetic recombination and recombination-dependent replication

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

The importance of repairing stalled replication forks

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Polymerization and mechanical properties of single RecA-DNA filaments

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

RecA polymerization on double-stranded DNA by using single-molecule manipulation: the role of ATP hydrolysis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Fluorescence spectroscopy of single biomolecules.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

RecA tests homology at both pairing and strand exchange

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

The specificity of the secondary DNA binding site of RecA protein defines its role in DNA strand exchange

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Parallel DNA triplexes, homologous recombination, and other homology-dependent DNA interactions

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Biochemistry of homologous recombination in Escherichia coli

13 July 2018

1 reference

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DNA-strand exchange promoted by RecA protein in the absence of ATP: implications for the mechanism of energy transduction in protein-promoted nucleic acid transactions

13 July 2018

1 reference

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Studies of the interaction of RecA protein with DNA

13 July 2018

1 reference

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Two binding modes in Escherichia coli single strand binding protein-single stranded DNA complexes. Modulation by NaCl concentration.

13 July 2018

1 reference

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Stable DNA heteroduplex formation catalyzed by the Escherichia coli RecA protein in the absence of ATP hydrolysis

13 July 2018

1 reference

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Energetics of RecA-mediated recombination reactions. Without ATP hydrolysis RecA can mediate polar strand exchange but is unable to recycle

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

The synapsis event in the homologous pairing of DNAs: RecA recognizes and pairs less than one helical repeat of DNA

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Stable synapsis of homologous DNA molecules mediated by the Escherichia coli RecA protein involves local exchange of DNA strands

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

On the mechanism of genetic recombination: electron microscopic observation of recombination intermediates

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Homologous recombination in real time: DNA strand exchange by RecA.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Mechanism of RecA-mediated homologous recombination revisited by single molecule nanomanipulation.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Origins of sequence selectivity in homologous genetic recombination: insights from rapid kinetic probing of RecA-mediated DNA strand exchange.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Synaptic complex revisited; a homologous recombinase flips and switches bases

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Elucidating a key intermediate in homologous DNA strand exchange: structural characterization of the RecA-triple-stranded DNA complex using fluorescence resonance energy transfer

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

DNA strand exchange proteins: a biochemical and physical comparison.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

The function of the secondary DNA-binding site of RecA protein during DNA strand exchange

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

DNA strand exchange mediated by the Escherichia coli RecA protein initiates in the minor groove of double-stranded DNA.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Interactions of three strands in joints made by RecA protein.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163668

Occurrence of three-stranded DNA within a RecA protein filament

27 September 2018

1 reference

12 December 2020

Sequence-specific covalent modification of DNA by cross-linking oligonucleotides. Catalysis by RecA and implication for the mechanism of synaptic joint formation

1 reference

12 December 2020

A possible role of the C-terminal domain of the RecA protein. A gateway model for double-stranded DNA binding

1 reference

12 December 2020

No sliding during homology search by RecA protein

1 reference

12 December 2020

Visualizing the assembly of human Rad51 filaments on double-stranded DNA

1 reference

12 December 2020

Structural biology: Snapshots of DNA repair

1 reference

12 December 2020

Elongation of duplex DNA by recA protein

1 reference

12 December 2020

Electron microscopic visualization of recA-DNA filaments: evidence for a cyclic extension of duplex DNA

1 reference

12 December 2020

Characterization of complexes between recA protein and duplex DNA by electron microscopy

1 reference

12 December 2020

The mechanics of winding and unwinding helices in recombination: torsional stress associated with strand transfer promoted by RecA protein

1 reference

12 December 2020

10.1016/J.STR.2011.06.009

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21827943%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21827943%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

PubMed publication ID

21827943

1 reference