Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles. (Q35195964)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21685128%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

title

Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles (English)

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5 February 2020

1

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5 February 2020

Benjamin Czech

2

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5 February 2020

Makedonka Mitreva

5

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6

Gregory J Hannon

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5 February 2020

author name string

Amanda Crunk

3

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5 February 2020

Adam Wallace

4

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5 February 2020

Richard E Davis

7

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5 February 2020

publication date

17 June 2011

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5 February 2020

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5 February 2020

volume

21

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5 February 2020

page(s)

1462-1477

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5 February 2020

issue

9

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PIWI-interacting small RNAs: the vanguard of genome defence

5 February 2020

cites work

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13 July 2018

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The conserved miR-51 microRNA family is redundantly required for embryonic development and pharynx attachment in Caenorhabditis elegans

13 July 2018

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Human tRNA-derived small RNAs in the global regulation of RNA silencing

13 July 2018

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The nematode eukaryotic translation initiation factor 4E/G complex works with a trans-spliced leader stem-loop to enable efficient translation of trimethylguanosine-capped RNAs

13 July 2018

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Argonautes ALG-3 and ALG-4 are required for spermatogenesis-specific 26G-RNAs and thermotolerant sperm in Caenorhabditis elegans

13 July 2018

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Sequential rounds of RNA-dependent RNA transcription drive endogenous small-RNA biogenesis in the ERGO-1/Argonaute pathway

13 July 2018

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Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma.

13 July 2018

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MicroRNA activity is suppressed in mouse oocytes

13 July 2018

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MicroRNA function is globally suppressed in mouse oocytes and early embryos

13 July 2018

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Many families of C. elegans microRNAs are not essential for development or viability

13 July 2018

1 reference

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Hierarchical rules for Argonaute loading in Drosophila

13 July 2018

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26G endo-siRNAs regulate spermatogenic and zygotic gene expression in Caenorhabditis elegans

13 July 2018

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A Caenorhabditis elegans RNA-directed RNA polymerase in sperm development and endogenous RNA interference

13 July 2018

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The Argonaute CSR-1 and its 22G-RNA cofactors are required for holocentric chromosome segregation

13 July 2018

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Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline

13 July 2018

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Repertoire and evolution of miRNA genes in four divergent nematode species

13 July 2018

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Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression

13 July 2018

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The maternal-to-zygotic transition: a play in two acts

13 July 2018

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The genetics and cell biology of spermatogenesis in the nematode C. elegans

13 July 2018

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Small RNAs derived from snoRNAs

13 July 2018

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Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development

13 July 2018

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Small RNAs as guardians of the genome

13 July 2018

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Origins and Mechanisms of miRNAs and siRNAs

13 July 2018

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MicroRNAs: target recognition and regulatory functions

13 July 2018

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Biogenesis of small RNAs in animals

13 July 2018

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Small RNAs in transcriptional gene silencing and genome defence

13 July 2018

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13 July 2018

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13 July 2018

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Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity

13 July 2018

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Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

13 July 2018

1 reference

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Endogenous small interfering RNAs in animals

13 July 2018

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Neglected infections of poverty in the United States of America

13 July 2018

1 reference

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PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans

13 July 2018

1 reference

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Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline

13 July 2018

1 reference

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A C. elegans Piwi, PRG-1, regulates 21U-RNAs during spermatogenesis

13 July 2018

1 reference

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Most Caenorhabditis elegans microRNAs are individually not essential for development or viability

13 July 2018

1 reference

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Draft genome of the filarial nematode parasite Brugia malayi

13 July 2018

1 reference

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The maternal-zygotic transition: death and birth of RNAs

13 July 2018

1 reference

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Maternal microRNAs are essential for mouse zygotic development

13 July 2018

1 reference

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Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

13 July 2018

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Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans

13 July 2018

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RETRACTED: Secondary siRNAs result from unprimed RNA synthesis and form a distinct class

13 July 2018

1 reference

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Distinct populations of primary and secondary effectors during RNAi in C. elegans

13 July 2018

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A distinct small RNA pathway silences selfish genetic elements in the germline

13 July 2018

1 reference

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Soil-transmitted helminth infections: ascariasis, trichuriasis, and hookworm

13 July 2018

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Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs

13 July 2018

1 reference

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RNA-guided DNA deletion in Tetrahymena: an RNAi-based mechanism for programmed genome rearrangements

13 July 2018

1 reference

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Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development

13 July 2018

1 reference

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Nematode m7GpppG and m3(2,2,7)GpppG decapping: activities in Ascaris embryos and characterization of C. elegans scavenger DcpS

13 July 2018

1 reference

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RNAi-dependent and RNAi-independent mechanisms contribute to the silencing of RIPed sequences in Neurospora crassa

13 July 2018

1 reference

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Small RNAs in genome rearrangement in Tetrahymena.

13 July 2018

1 reference

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MicroRNAs: genomics, biogenesis, mechanism, and function

13 July 2018

1 reference

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Dicer is essential for mouse development

13 July 2018

1 reference

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MicroRNAs and other tiny endogenous RNAs in C. elegans

13 July 2018

1 reference

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The microRNAs of Caenorhabditis elegans

13 July 2018

1 reference

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Transcriptional silencing and translational control: key features of early germline development

13 July 2018

1 reference

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A uniform system for microRNA annotation

13 July 2018

1 reference

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On the role of RNA amplification in dsRNA-triggered gene silencing

13 July 2018

1 reference

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An extensive class of small RNAs in Caenorhabditis elegans

13 July 2018

1 reference

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An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

13 July 2018

1 reference

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Chromosome elimination in sciarid flies

13 July 2018

1 reference

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Chromatin diminution in the parasitic nematodes ascaris suum and parascaris univalens

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166831

Transient expression of DNA and RNA in parasitic helminths by using particle bombardment

13 July 2018

1 reference

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Extremely stable transcripts may compensate for the elimination of the gene fert-1 from all Ascaris lumbricoides somatic cells

13 July 2018

1 reference

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Nucleotide sequence of satellite DNA contained in the eliminated genome ofAscaris lumbricoides

13 July 2018

1 reference

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Chromatin diminution in Ascaris suum: nucleotide sequence of the eliminated satellite DNA

13 July 2018

1 reference

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Transcription of a nematode trans-spliced leader RNA requires internal elements for both initiation and 3' end-formation

13 July 2018

1 reference

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Trans splicing of nematode pre-messenger RNA in vitro.

13 July 2018

1 reference

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Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166831

CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166831

Theodor and Marcella Boveri: chromosomes and cytoplasm in heredity and development.

26 September 2018

1 reference

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Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166831

A global profile of germline gene expression in C. elegans

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166831

Most mRNAs in the nematode Ascaris lumbricoides are trans-spliced: a role for spliced leader addition in translational efficiency

26 September 2018

1 reference

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Early transcription in Caenorhabditis elegans embryos.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166831

RNA metabolism of fertilized Ascaris lumbricoides eggs during uterine development

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166831

Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi

26 September 2018

1 reference

12 December 2020

Daily egg production of Ascaris lumbricoides: the distribution of eggs in the faeces and the variability of egg counts

1 reference

12 December 2020

Transcription in nematodes: early Ascaris embryos are transcriptionally active

1 reference

12 December 2020

The biochemistry of Ascaris

1 reference

12 December 2020

MicroRNA control of Nodal signalling

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.121426.111

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21685128%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21685128%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

1 reference