Structural determinants of TAR RNA-DNA annealing in the absence and presence of HIV-1 nucleocapsid protein (Q35259243)

7 August 2017

title

Structural determinants of TAR RNA-DNA annealing in the absence and presence of HIV-1 nucleocapsid protein (English)

1 reference

7 August 2017

1 reference

Igor Kanevsky

1

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7 August 2017

Françoise Chaminade

2

1 reference

7 August 2017

Yingying Chen

3

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7 August 2017

Julien Godet

4

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7 August 2017

Brigitte René

5

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7 August 2017

Jean-Luc Darlix

6

1 reference

7 August 2017

Yves Mély

7

1 reference

7 August 2017

Olivier Mauffret

8

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7 August 2017

Philippe Fossé

9

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7 August 2017

language of work or name

English

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publication date

30 June 2011

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7 August 2017

published in

Nucleic Acids Research

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7 August 2017

volume

39

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7 August 2017

issue

18

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7 August 2017

page(s)

8148-8162

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Creative Commons Attribution-NonCommercial 3.0 Unported

7 August 2017

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3185427/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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When is it time for reverse transcription to start and go?

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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Human immunodeficiency virus type 1 nucleocapsid protein promotes efficient strand transfer and specific viral DNA synthesis by inhibiting TAR-dependent self-priming from minus-strand strong-stop DNA.

12 July 2018

1 reference

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Interactions between HIV-1 nucleocapsid protein and viral DNA may have important functions in the viral life cycle

12 July 2018

1 reference

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Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro

12 July 2018

1 reference

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A conserved hairpin structure predicted for the poly(A) signal of human and simian immunodeficiency viruses

12 July 2018

1 reference

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Analysis of the nucleic acid annealing activities of nucleocapsid protein from HIV-1.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185427

Pyrimidine-specific chemical reactions useful for DNA sequencing.

12 July 2018

1 reference

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57 Sequencing end-labeled DNA with base-specific chemical cleavages

12 July 2018

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Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

12 July 2018

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HIV-1 tat trans-activation requires the loop sequence within tar.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185427

First large scale chemical synthesis of the 72 amino acid HIV-1 nucleocapsid protein NCp7 in an active form.

12 July 2018

1 reference

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HIV-1 nucleocapsid protein bends double-stranded nucleic acids

12 July 2018

1 reference

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Structural requirements for nucleocapsid protein-mediated dimerization of avian leukosis virus RNA.

26 September 2018

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During the early phase of HIV-1 DNA synthesis, nucleocapsid protein directs hybridization of the TAR complementary sequences via the ends of their double-stranded stem.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185427

Specific interactions between HIV-1 nucleocapsid protein and the TAR element

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185427

Differing roles of the N- and C-terminal zinc fingers in human immunodeficiency virus nucleocapsid protein-enhanced nucleic acid annealing

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185427

Impact of the terminal bulges of HIV-1 cTAR DNA on its stability and the destabilizing activity of the nucleocapsid protein NCp7.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185427

Affinities of packaging domain loops in HIV-1 RNA for the nucleocapsid protein

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185427

Ordered aggregation of ribonucleic acids by the human immunodeficiency virus type 1 nucleocapsid protein.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185427

A short autocomplementary sequence plays an essential role in avian sarcoma-leukosis virus RNA dimerization.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185427

Human immunodeficiency virus nucleocapsid protein accelerates strand transfer of the terminally redundant sequences involved in reverse transcription

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185427

Rapid kinetics of protein-nucleic acid interaction is a major component of HIV-1 nucleocapsid protein's nucleic acid chaperone function

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185427

Trans-activation of the 5' to 3' viral DNA strand transfer by nucleocapsid protein during reverse transcription of HIV1 RNA

24 October 2018

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12 December 2020

Recombinant HIV-1 nucleocapsid protein accelerates HIV-1 reverse transcriptase catalyzed DNA strand transfer reactions and modulates RNase H activity

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12 December 2020

Kissing-loop model of HIV-1 genome dimerization: HIV-1 RNAs can assume alternative dimeric forms, and all sequences upstream or downstream of hairpin 248-271 are dispensable for dimer formation

1 reference

12 December 2020

Structural determinants of HIV-1 nucleocapsid protein for cTAR DNA binding and destabilization, and correlation with inhibition of self-primed DNA synthesis

1 reference

12 December 2020

Mechanistic studies of mini-TAR RNA/DNA annealing in the absence and presence of HIV-1 nucleocapsid protein

1 reference

12 December 2020

Nucleic acid conformational changes essential for HIV-1 nucleocapsid protein-mediated inhibition of self-priming in minus-strand transfer

1 reference

12 December 2020

Affinities of the nucleocapsid protein for variants of SL3 RNA in HIV-1

1 reference

12 December 2020

Destabilization of the HIV-1 complementary sequence of TAR by the nucleocapsid protein through activation of conformational fluctuations

1 reference

12 December 2020

Steps of the acceptor invasion mechanism for HIV-1 minus strand strong stop transfer

1 reference

12 December 2020

Conformational transitions in thymidine bulge-containing deoxytridecanucleotide duplexes. Role of flanking sequence and temperature in modulating the equilibrium between looped out and stacked thymidine bulge states

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKR526

1 reference

7 August 2017

1 reference

7 August 2017

1 reference