Fitness costs and diversity of the cytotoxic T lymphocyte (CTL) response determine the rate of CTL escape during acute and chronic phases of HIV infection (Q35274776)

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English	Fitness costs and diversity of the cytotoxic T lymphocyte (CTL) response determine the rate of CTL escape during acute and chronic phases of HIV infection	scientific article

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scholarly article

1 reference

Europe PubMed Central

7 August 2017

Fitness costs and diversity of the cytotoxic T lymphocyte (CTL) response determine the rate of CTL escape during acute and chronic phases of HIV infection (English)

1 reference

Europe PubMed Central

7 August 2017

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8

1 reference

Europe PubMed Central

7 August 2017

object named as

Vitaly V Ganusov

1

0 references

object named as

Guido Ferrari

4

0 references

Persephone Borrow

object named as

Persephone Borrow

7

0 references

5

object named as

George M Shaw

1 reference

Europe PubMed Central

7 August 2017

Alan S. Perelson

9

object named as

Alan S Perelson

1 reference

Europe PubMed Central

7 August 2017

Andrew James McMichael

6

object named as

Andrew J McMichael

1 reference

Europe PubMed Central

7 August 2017

author name string

Nilu Goonetilleke

2

1 reference

Europe PubMed Central

7 August 2017

Michael K P Liu

3

1 reference

Europe PubMed Central

7 August 2017

language of work or name

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publication date

10 August 2011

1 reference

Europe PubMed Central

7 August 2017

Journal of Virology

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Europe PubMed Central

7 August 2017

85

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Europe PubMed Central

7 August 2017

20

1 reference

Europe PubMed Central

7 August 2017

10518-10528

1 reference

Europe PubMed Central

7 August 2017

Cross-sectional detection of acute HIV infection: timing of transmission, inflammation and antiretroviral therapy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

12 July 2018

Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

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Killing of targets by CD8 T cells in the mouse spleen follows the law of mass action

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

12 July 2018

Taking multiple infections of cells and recombination into account leads to small within-host effective-population-size estimates of HIV-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

12 July 2018

Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

12 July 2018

Estimation of the initial viral growth rate and basic reproductive number during acute HIV-1 infection

1 reference

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12 July 2018

Recombination rate and selection strength in HIV intra-patient evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

12 July 2018

In vivo CD8+ T-cell suppression of siv viremia is not mediated by CTL clearance of productively infected cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

12 July 2018

CD8+ lymphocytes control viral replication in SIVmac239-infected rhesus macaques without decreasing the lifespan of productively infected cells

1 reference

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12 July 2018

HIV-1 vaccine development after STEP.

1 reference

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12 July 2018

The immune response during acute HIV-1 infection: clues for vaccine development

1 reference

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12 July 2018

The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

1 reference

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12 July 2018

Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

12 July 2018

Evolution of HLA-B*5703 HIV-1 escape mutations in HLA-B*5703-positive individuals and their transmission recipients

1 reference

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12 July 2018

HLA-B57/B*5801 human immunodeficiency virus type 1 elite controllers select for rare gag variants associated with reduced viral replication capacity and strong cytotoxic T-lymphocyte [corrected] recognition

1 reference

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12 July 2018

Lytic granule loading of CD8+ T cells is required for HIV-infected cell elimination associated with immune control

1 reference

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12 July 2018

Post-step modifications for research on HIV vaccines

1 reference

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12 July 2018

Protective HLA class I alleles that restrict acute-phase CD8+ T-cell responses are associated with viral escape mutations located in highly conserved regions of human immunodeficiency virus type 1.

1 reference

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12 July 2018

Human immunodeficiency virus-specific gamma interferon enzyme-linked immunospot assay responses targeting specific regions of the proteome during primary subtype C infection are poor predictors of the course of viremia and set point

1 reference

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12 July 2018

Functional consequences of human immunodeficiency virus escape from an HLA-B*13-restricted CD8+ T-cell epitope in p1 Gag protein.

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12 July 2018

The evolutionary selective advantage of HIV-1 escape variants and the contribution of escape to the HLA-associated risk of AIDS progression

1 reference

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12 July 2018

Macaques vaccinated with live-attenuated SIV control replication of heterologous virus

1 reference

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12 July 2018

Estimating the impact of vaccination on acute simian-human immunodeficiency virus/simian immunodeficiency virus infections

1 reference

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12 July 2018

Dynamics of immune escape during HIV/SIV infection

1 reference

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12 July 2018

Induction of plasma (TRAIL), TNFR-2, Fas ligand, and plasma microparticles after human immunodeficiency virus type 1 (HIV-1) transmission: implications for HIV-1 vaccine design

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12 July 2018

Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

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12 July 2018

Selection dramatically reduces effective population size in HIV-1 infection

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12 July 2018

CD4+ target cell availability determines the dynamics of immune escape and reversion in vivo

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12 July 2018

Vaccination and timing influence SIV immune escape viral dynamics in vivo

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Do most lymphocytes in humans really reside in the gut?

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12 July 2018

Recognition of escape variants in ELISPOT does not always predict CD8+ T-cell recognition of simian immunodeficiency virus-infected cells expressing the same variant sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

12 July 2018

Estimating the effectiveness of simian immunodeficiency virus-specific CD8+ T cells from the dynamics of viral immune escape

1 reference

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12 July 2018

In vivo T lymphocyte dynamics in humans and the impact of human T-lymphotropic virus 1 infection

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Apoptosis induced by the lymphocyte effector molecule perforin

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High throughput functional analysis of HIV-1 env genes without cloning

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Effective T-cell responses select human immunodeficiency virus mutants and slow disease progression

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In vivo CD8+ T cell control of immunodeficiency virus infection in humans and macaques

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12 July 2018

Estimation of the rate of killing by cytotoxic T lymphocytes in vivo

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12 July 2018

The antiviral efficacy of simian immunodeficiency virus-specific CD8+ T cells is unrelated to epitope specificity and is abrogated by viral escape

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12 July 2018

Not all cytokine-producing CD8+ T cells suppress simian immunodeficiency virus replication

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12 July 2018

Mechanisms of gastrointestinal CD4+ T-cell depletion during acute and early human immunodeficiency virus type 1 infection

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12 July 2018

Stochastic or deterministic: what is the effective population size of HIV-1?

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12 July 2018

Estimating Costs and Benefits of CTL Escape Mutations in SIV/HIV Infection

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12 July 2018

Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1

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Inefficient cytotoxic T lymphocyte-mediated killing of HIV-1-infected cells in vivo

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12 July 2018

Involvement of multiple epitope-specific cytotoxic T-lymphocyte responses in vaccine-based control of simian immunodeficiency virus replication in rhesus macaques

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12 July 2018

Cytotoxic T-lymphocyte escape does not always explain the transient control of simian immunodeficiency virus SIVmac239 viremia in adenovirus-boosted and DNA-primed Mamu-A*01-positive rhesus macaques

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12 July 2018

Attenuation of simian immunodeficiency virus SIVmac239 infection by prophylactic immunization with dna and recombinant adenoviral vaccine vectors expressing Gag

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12 July 2018

De novo generation of escape variant-specific CD8+ T-cell responses following cytotoxic T-lymphocyte escape in chronic human immunodeficiency virus type 1 infection

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12 July 2018

Reversion of immune escape HIV variants upon transmission: insights into effective viral immunity

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12 July 2018

Rapid viral escape at an immunodominant simian-human immunodeficiency virus cytotoxic T-lymphocyte epitope exacts a dramatic fitness cost

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12 July 2018

Fitness costs limit viral escape from cytotoxic T lymphocytes at a structurally constrained epitope

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12 July 2018

Determinants of human immunodeficiency virus type 1 escape from the primary CD8+ cytotoxic T lymphocyte response

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12 July 2018

Molecular clock-like evolution of human immunodeficiency virus type 1.

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12 July 2018

Primary HIV-1 infection is associated with preferential depletion of CD4+ T lymphocytes from effector sites in the gastrointestinal tract

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12 July 2018

HIV and SIV CTL escape: implications for vaccine design

1 reference

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12 July 2018

Selection, transmission, and reversion of an antigen-processing cytotoxic T-lymphocyte escape mutation in human immunodeficiency virus type 1 infection

1 reference

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12 July 2018

Immune selection for altered antigen processing leads to cytotoxic T lymphocyte escape in chronic HIV-1 infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

12 July 2018

The search for the CD8+ cell anti-HIV factor (CAF).

1 reference

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12 July 2018

Identification of Sequential Viral Escape Mutants Associated with Altered T-Cell Responses in a Human Immunodeficiency Virus Type 1-Infected Individual

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

12 July 2018

Viral escape from dominant simian immunodeficiency virus epitope-specific cytotoxic T lymphocytes in DNA-vaccinated rhesus monkeys

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

12 July 2018

A novel antiviral intervention results in more accurate assessment of human immunodeficiency virus type 1 replication dynamics and T-cell decay in vivo

1 reference

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12 July 2018

Viral persistence alters CD8 T-cell immunodominance and tissue distribution and results in distinct stages of functional impairment

1 reference

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12 July 2018

Comprehensive epitope analysis of human immunodeficiency virus type 1 (HIV-1)-specific T-cell responses directed against the entire expressed HIV-1 genome demonstrate broadly directed responses, but no correlation to viral load.

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12 July 2018

Noncytolytic control of viral infections by the innate and adaptive immune response

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12 July 2018

Rapid production and clearance of HIV-1 and hepatitis C virus assessed by large volume plasma apheresis

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12 July 2018

Viral dynamics of acute HIV-1 infection

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12 July 2018

Lack of viral escape and defective in vivo activation of human immunodeficiency virus type 1-specific cytotoxic T lymphocytes in rapidly progressive infection

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12 July 2018

Rapid clearance of simian immunodeficiency virus particles from plasma of rhesus macaques

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12 July 2018

Antigen-specific release of beta-chemokines by anti-HIV-1 cytotoxic T lymphocytes

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12 July 2018

Beta-chemokines are released from HIV-1-specific cytolytic T-cell granules complexed to proteoglycans

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12 July 2018

Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus

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12 July 2018

Forward mutation rate of human immunodeficiency virus type 1 in a T lymphoid cell line

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12 July 2018

Tickling memory T cells.

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12 July 2018

HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time

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12 July 2018

Identification of RANTES, MIP-1 alpha, and MIP-1 beta as the major HIV-suppressive factors produced by CD8+ T cells

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12 July 2018

Antigenic Diversity Thresholds and the Development of AIDS

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12 July 2018

No evidence for competition between cytotoxic T-lymphocyte responses in HIV-1 infection.

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26 September 2018

Immune control of an SIV challenge by a T-cell-based vaccine in rhesus monkeys

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26 September 2018

Dynamics of CD8+ T cell responses during acute and chronic lymphocytic choriomeningitis virus infection

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26 September 2018

Waiting times for the appearance of cytotoxic T-lymphocyte escape mutants in chronic HIV-1 infection

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26 September 2018

HIV evolution: CTL escape mutation and reversion after transmission

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26 September 2018

Acute phase cytotoxic T lymphocyte escape is a hallmark of simian immunodeficiency virus infection

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26 September 2018

Emergence of cytotoxic T lymphocyte escape mutations in nonpathogenic simian immunodeficiency virus infection

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26 September 2018

A condition for successful escape of a mutant after primary HIV infection.

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26 September 2018

Towards a general function describing T cell proliferation.

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26 September 2018

Eventual AIDS vaccine failure in a rhesus monkey by viral escape from cytotoxic T lymphocytes

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15 November 2018

Tat-specific cytotoxic T lymphocytes select for SIV escape variants during resolution of primary viraemia

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15 November 2018

HIV results in the frame

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187476

15 November 2018

Rates of HIV immune escape and reversion: implications for vaccination

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835793

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Control of viremia and prevention of clinical AIDS in rhesus monkeys by cytokine-augmented DNA vaccination

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835793

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kinetics of expansion of epitope-specific T cell responses during primary HIV-1 infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835793

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Does Cytolysis by CD8+ T Cells Drive Immune Escape in HIV Infection?

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835793

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanism of cell-mediated cytotoxicity at the single cell level. VIII. Kinetics of lysis of target cells bound by more than one cytotoxic T lymphocyte

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835793

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transfer of HIV-1-specific cytotoxic T lymphocytes to an AIDS patient leads to selection for mutant HIV variants and subsequent disease progression

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835793

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835793

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JVI.00655-11

1 reference

Europe PubMed Central

7 August 2017

1 reference

Europe PubMed Central

7 August 2017

1 reference

Europe PubMed Central

7 August 2017

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