Integration of SNP genotyping confidence scores in IBD inference (Q35276415)

7 August 2017

Integration of SNP genotyping confidence scores in IBD inference (English)

1 reference

7 August 2017

1 reference

Barak Markus

1

1 reference

7 August 2017

Ohad S Birk

series ordinal

2

1 reference

7 August 2017

Dan Geiger

series ordinal

3

1 reference

7 August 2017

language of work or name

English

0 references

publication date

23 August 2011

1 reference

7 August 2017

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7 August 2017

27

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7 August 2017

20

1 reference

7 August 2017

2880-2887

1 reference

Pelizaeus-Merzbacher-like disease caused by AIMP1/p43 homozygous mutation.

7 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Estimating genome-wide IBD sharing from SNP data via an efficient hidden Markov model of LD with application to gene mapping

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

High-resolution detection of identity by descent in unrelated individuals

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

OpenADAM: an open source genome-wide association data management system for Affymetrix SNP arrays

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Genome-wide association studies for complex traits: consensus, uncertainty and challenges

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

The IBD process along four chromosomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

PLINK: a tool set for whole-genome association and population-based linkage analyses

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Genotyping errors: causes, consequences and solutions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

SimPed: a simulation program to generate haplotype and genotype data for pedigree structures

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Estimation of the inbreeding coefficient through use of genomic data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Detection and integration of genotyping errors in statistical genetics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Probability of detection of genotyping errors and mutations as inheritance inconsistencies in nuclear-family data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Merlin--rapid analysis of dense genetic maps using sparse gene flow trees

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

The effect that genotyping errors have on the robustness of common linkage-disequilibrium measures

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

A multipoint method for detecting genotyping errors and mutations in sibling-pair linkage data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

PedCheck: a program for identification of genotype incompatibilities in linkage analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Parametric and nonparametric linkage analysis: a unified multipoint approach

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Descent graphs in pedigree analysis: applications to haplotyping, location scores, and marker-sharing statistics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Rapid multipoint linkage analysis of recessive traits in nuclear families, including homozygosity mapping.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Complete multipoint sib-pair analysis of qualitative and quantitative traits

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Construction of multilocus genetic linkage maps in humans

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Systematic detection of errors in genetic linkage data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Estimating genotyping error rates from Mendelian errors in SNP array genotypes and their impact on inference.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

Exact genetic linkage computations for general pedigrees.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

An analytic solution to single nucleotide polymorphism error-detection rates in nuclear families: implications for study design.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

The impact of genotyping error on family-based analysis of quantitative traits

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187655

The impact of genotyping error on haplotype reconstruction and frequency estimation

15 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21862568

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comparative Study of Multipoint Methods for Genotype Error Detection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21862568

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTR486

1 reference

journals/bioinformatics/MarkusBG11

7 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

7 August 2017

1 reference