Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula (Q35408770)

8 August 2017

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula (English)

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8 August 2017

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linkage disequilibrium

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inferred from title

whole genome sequencing

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10

Laurent Gentzbittel

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ORCID Public Data File 2021

8 August 2017

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author name string

Antoine Branca

1

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8 August 2017

Timothy D Paape

2

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8 August 2017

Peng Zhou

3

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8 August 2017

Roman Briskine

4

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8 August 2017

Andrew D Farmer

5

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8 August 2017

Joann Mudge

6

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8 August 2017

Arvind K Bharti

7

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8 August 2017

Jimmy E Woodward

8

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8 August 2017

Gregory D May

9

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8 August 2017

Cécile Ben

11

1 reference

8 August 2017

Roxanne Denny

12

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8 August 2017

Michael J Sadowsky

13

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8 August 2017

Joëlle Ronfort

14

1 reference

8 August 2017

Thomas Bataillon

15

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8 August 2017

Nevin D Young

16

1 reference

8 August 2017

Peter Tiffin

17

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8 August 2017

language of work or name

English

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publication date

26 September 2011

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Proceedings of the National Academy of Sciences of the United States of America

8 August 2017

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8 August 2017

108

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42

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8 August 2017

E864-70

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Molecular adaptation in flowering and symbiotic recognition pathways: insights from patterns of polymorphism in the legume Medicago truncatula

8 August 2017

1 reference

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Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

12 July 2018

1 reference

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Conditions under which genome-wide association studies will be positively misleading.

12 July 2018

1 reference

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Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation.

12 July 2018

1 reference

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Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

12 July 2018

1 reference

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Genetic hitchhiking versus background selection: the controversy and its implications

12 July 2018

1 reference

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Fast and SNP-tolerant detection of complex variants and splicing in short reads

12 July 2018

1 reference

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Rare variants create synthetic genome-wide associations

12 July 2018

1 reference

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A first-generation haplotype map of maize

12 July 2018

1 reference

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A single molecule scaffold for the maize genome

12 July 2018

1 reference

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Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

12 July 2018

1 reference

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Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10.

12 July 2018

1 reference

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Translating Medicago truncatula genomics to crop legumes

12 July 2018

1 reference

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Accurate whole human genome sequencing using reversible terminator chemistry

12 July 2018

1 reference

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Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

12 July 2018

1 reference

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Investigation of the demographic and selective forces shaping the nucleotide diversity of genes involved in nod factor signaling in Medicago truncatula

12 July 2018

1 reference

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Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans

12 July 2018

1 reference

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Genome-wide patterns of nucleotide polymorphism in domesticated rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Recombination and linkage disequilibrium in Arabidopsis thaliana.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Using multilocus sequence data to assess population structure, natural selection, and linkage disequilibrium in wild tomatoes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Localizing recent adaptive evolution in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Population structure and its effects on patterns of nucleotide polymorphism in teosinte (Zea mays ssp. parviglumis)

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Transcription-related mutations and GC content drive variation in nucleotide substitution rates across the genomes of Arabidopsis thaliana and Arabidopsis lyrata

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Highly variable patterns of linkage disequilibrium in multiple soybean populations.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Microsatellite diversity and broad scale geographic structure in a model legume: building a set of nested core collection for studying naturally occurring variation in Medicago truncatula.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Distribution of microsatellites in the genome of Medicago truncatula: a resource of genetic markers that integrate genetic and physical maps

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Genetics and functional genomics of legume nodulation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Molecular signatures of natural selection

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

A haplotype map of the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Signaling in the arbuscular mycorrhizal symbiosis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

The pattern of polymorphism in Arabidopsis thaliana

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

The fine-scale structure of recombination rate variation in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

The maintenance of extreme amino acid diversity at the disease resistance gene, RPP13, in Arabidopsis thaliana

12 July 2018

1 reference

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Libsequence: a C++ class library for evolutionary genetic analysis.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Legumes: importance and constraints to greater use.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

A coalescent-based method for detecting and estimating recombination from gene sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

The extent of linkage disequilibrium in Arabidopsis thaliana

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Is self-fertilization an evolutionary dead end? Revisiting an old hypothesis with genetic theories and a macroevolutionary approach

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

The pattern of neutral molecular variation under the background selection model

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

The effect of deleterious mutations on neutral molecular variation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

On the number of segregating sites in genetical models without recombination

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Genome-wide association studies of 14 agronomic traits in rice landraces.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Plant peptides govern terminal differentiation of bacteria in symbiosis.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Conditional neutrality at two adjacent NBS-LRR disease resistance loci in natural populations of Arabidopsis lyrata.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Accurate inference and estimation in population genomics

26 September 2018

1 reference

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Adaptive evolution of non-coding DNA in Drosophila

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Spatial effects and rare outcrossing events in Medicago truncatula (Fabaceae).

26 September 2018

1 reference

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Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization

26 September 2018

1 reference

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Structured coalescent processes on different time scales.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198318

Context dependence in the coevolution of plant and rhizobial mutualists

26 September 2018

1 reference

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Genome-wide association study of leaf architecture in the maize nested association mapping population

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1104032108

The Medicago truncatula reference accession A17 has an aberrant chromosomal configuration

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1104032108

How multilocus genotypic pattern helps to understand the history of selfing populations: a case study in Medicago truncatula

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21949378

12 December 2020

inferred from PubMed ID database lookup

Large-scale insertional mutagenesis using the Tnt1 retrotransposon in the model legume Medicago truncatula

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21949378

12 December 2020

inferred from PubMed ID database lookup

Nucleotide diversity and linkage disequilibrium in balsam poplar (Populus balsamifera)

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21949378

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.1104032108

1 reference

8 August 2017

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1 reference

8 August 2017

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