The Azoarcus group I intron ribozyme misfolds and is accelerated for refolding by ATP-dependent RNA chaperone proteins (Q35423608)

8 August 2017

The Azoarcus group I intron ribozyme misfolds and is accelerated for refolding by ATP-dependent RNA chaperone proteins (English)

1 reference

8 August 2017

0 references

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CYT-19 DEAD-box protein

0 references

1 reference

Selma Sinan

1

1 reference

8 August 2017

Xiaoyan Yuan

series ordinal

2

1 reference

8 August 2017

Rick Russell

series ordinal

3

1 reference

8 August 2017

language of work or name

English

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publication date

30 August 2011

1 reference

Journal of Biological Chemistry

8 August 2017

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8 August 2017

286

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8 August 2017

43

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8 August 2017

37304-37312

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describes a project that uses

8 August 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3199477/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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DEAD-box proteins as RNA helicases and chaperones

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Roles of DEAD-box proteins in RNA and RNP Folding

27 July 2018

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Catalytic activity as a probe of native RNA folding

27 July 2018

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Single-molecule analysis of Mss116-mediated group II intron folding.

27 July 2018

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RNA helicases at work: binding and rearranging

27 July 2018

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Multistage collapse of a bacterial ribozyme observed by time-resolved small-angle X-ray scattering

27 July 2018

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Dual roles for the Mss116 cofactor during splicing of the ai5γ group II intron

27 July 2018

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Multiple unfolding events during native folding of the Tetrahymena group I ribozyme

27 July 2018

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Structure-guided mutational analysis of a yeast DEAD-box protein involved in mitochondrial RNA splicing

27 July 2018

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Compact intermediates in RNA folding.

27 July 2018

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Protein-facilitated folding of group II intron ribozymes

27 July 2018

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Metal ion dependence of cooperative collapse transitions in RNA

27 July 2018

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Global kinetic explorer: a new computer program for dynamic simulation and fitting of kinetic data

27 July 2018

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RNA misfolding and the action of chaperones

27 July 2018

1 reference

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DEAD-box proteins unwind duplexes by local strand separation

27 July 2018

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Do DEAD-box proteins promote group II intron splicing without unwinding RNA?

27 July 2018

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Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding

27 July 2018

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Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity

27 July 2018

1 reference

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A DEAD-box protein alone promotes group II intron splicing and reverse splicing by acting as an RNA chaperone

27 July 2018

1 reference

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RNA tertiary interactions mediate native collapse of a bacterial group I ribozyme

27 July 2018

1 reference

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Structural specificity conferred by a group I RNA peripheral element

27 July 2018

1 reference

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The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function

27 July 2018

1 reference

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Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme

27 July 2018

1 reference

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A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing

27 July 2018

1 reference

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Exploring the folding landscape of a structured RNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Small angle X-ray scattering reveals a compact intermediate in RNA folding

27 July 2018

1 reference

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New pathways in folding of the Tetrahymena group I RNA enzyme

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

A Pneumocystis carinii group I intron ribozyme that does not require 2' OH groups on its 5' exon mimic for binding to the catalytic core

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Activity and thermostability of the small self-splicing group I intron in the pre-tRNA(lle) of the purple bacterium Azoarcus

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Isolation of a local tertiary folding transition in the context of a globally folded RNA.

27 July 2018

1 reference

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Conformational switches involved in orchestrating the successive steps of group I RNA splicing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Improved free-energy parameters for predictions of RNA duplex stability

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

SF1 and SF2 helicases: family matters

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Unwinding by local strand separation is critical for the function of DEAD-box proteins as RNA chaperones

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Structural rearrangements linked to global folding pathways of the Azoarcus group I ribozyme

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

A DExH/D-box protein coordinates the two steps of splicing in a group I intron

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Tertiary interactions determine the accuracy of RNA folding

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Kinetic redistribution of native and misfolded RNAs by a DEAD-box chaperone

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Probing the mechanisms of DEAD-box proteins as general RNA chaperones: the C-terminal domain of CYT-19 mediates general recognition of RNA.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

The paradoxical behavior of a highly structured misfolded intermediate in RNA folding.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Monovalent cations use multiple mechanisms to resolve ribozyme misfolding.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Concordant exploration of the kinetics of RNA folding from global and local perspectives.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Fast formation of the P3-P7 pseudoknot: a strategy for efficient folding of the catalytically active ribozyme

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Crystal structure of a self-splicing group I intron with both exons

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Architecture and folding mechanism of the Azoarcus Group I Pre-tRNA.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Probing the Tetrahymena group I ribozyme reaction in both directions.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Probing the folding landscape of the Tetrahymena ribozyme: commitment to form the native conformation is late in the folding pathway.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Exposing the kinetic traps in RNA folding

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

Guanosine binding to the Tetrahymena ribozyme: thermodynamic coupling with oligonucleotide binding

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199477

RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M111.287706

Folding of RNA involves parallel pathways

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M111.287706

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M111.287706

Applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding

21 January 2018

1 reference

12 December 2020

A chemical phylogeny of group I introns based upon interference mapping of a bacterial ribozyme

1 reference

12 December 2020

Predicting thermodynamic properties of RNA

1 reference

12 December 2020

Mechanistic investigations of a ribozyme derived from the Tetrahymena group I intron: insights into catalysis and the second step of self-splicing

1 reference

12 December 2020

A DEAD protein that activates intron self-splicing without unwinding RNA

1 reference

12 December 2020

Characterization of the Azoarcus ribozyme: tight binding to guanosine and substrate by an unusually small group I ribozyme

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M111.287706

1 reference

8 August 2017

1 reference

8 August 2017

1 reference