RNA misfolding and the action of chaperones (Q24656891)

Dead-box proteins: a family affair--active and passive players in RNP-remodeling

Europe PubMed Central

title

RNA misfolding and the action of chaperones (English)

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Rick Russell

1

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language of work or name

English

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publication date

2008

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published in

Frontiers in Bioscience

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volume

13

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issue

13

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page(s)

1-20

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cites work

1 reference

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Structural insights into RNA quality control: the Ro autoantigen binds misfolded RNAs via its central cavity

7 April 2017

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Influence of RNA structural stability on the RNA chaperone activity of the Escherichia coli protein StpA

7 April 2017

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Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme

7 April 2017

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Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein

7 April 2017

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Exploring the folding landscape of a structured RNA

7 April 2017

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RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

7 April 2017

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Fewer Genes, More Noncoding RNA

7 April 2017

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Crystal structure of the specificity domain of ribonuclease P

7 April 2017

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Crystal structure of the ribosome at 5.5 A resolution

7 April 2017

1 reference

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Structure of the 30S ribosomal subunit

7 April 2017

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

7 April 2017

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Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain

7 April 2017

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Crystal structure of a conserved ribosomal protein-RNA complex

7 April 2017

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Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot

7 April 2017

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Crystal structure of the ribosomal RNA domain essential for binding elongation factors

7 April 2017

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Crystal structure of a hepatitis delta virus ribozyme

7 April 2017

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Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element

7 April 2017

1 reference

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Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain

7 April 2017

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Structure of a conserved RNA component of the peptidyl transferase centre

7 April 2017

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Crystal structure of a group I ribozyme domain: principles of RNA packing

7 April 2017

1 reference

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Crystal structure of CspA, the major cold shock protein of Escherichia coli

7 April 2017

1 reference

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ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1.

7 April 2017

1 reference

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The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function

7 April 2017

1 reference

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Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase

7 April 2017

1 reference

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Prp22, a DExH-box RNA helicase, plays two distinct roles in yeast pre-mRNA splicing

7 April 2017

1 reference

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Mechanical devices of the spliceosome: motors, clocks, springs, and things

7 April 2017

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Requirement of the DEAD-Box protein ded1p for messenger RNA translation

7 April 2017

1 reference

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Mitochondrial splicing requires a protein from a novel helicase family

7 April 2017

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RNase P: interface of the RNA and protein worlds

7 April 2017

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RNA tertiary interactions mediate native collapse of a bacterial group I ribozyme

7 April 2017

1 reference

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Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNA

7 April 2017

1 reference

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Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs

7 April 2017

1 reference

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STRUCTURE OF A RIBONUCLEIC ACID

7 April 2017

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Eukaryotic ribonuclease P: a plurality of ribonucleoprotein enzymes

7 April 2017

1 reference

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The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs

7 April 2017

1 reference

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microRNAs: tiny regulators with great potential

7 April 2017

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Internal ribosome entry sites in eukaryotic mRNA molecules

7 April 2017

1 reference

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Exposing the kinetic traps in RNA folding

7 April 2017

1 reference

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Ribonuclease P: unity and diversity in a tRNA processing ribozyme

7 April 2017

1 reference

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Structural basis for heterogeneous kinetics: reengineering the hairpin ribozyme

7 April 2017

1 reference

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Attenuation in the control of expression of bacterial operons

7 April 2017

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The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

7 April 2017

1 reference

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Studies of the strand-annealing activity of mammalian hnRNP complex protein A1

7 April 2017

1 reference

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A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme

7 April 2017

1 reference

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The DEAD-box protein family of RNA helicases

7 April 2017

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The small RNA regulators of Escherichia coli: roles and mechanisms*

7 April 2017

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The bacterial Sm-like protein Hfq: a key player in RNA transactions

7 April 2017

1 reference

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DExD/H box RNA helicases: from generic motors to specific dissociation functions

7 April 2017

1 reference

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C-terminal domain of the hepatitis C virus NS3 protein contains an RNA helicase activity

7 April 2017

1 reference

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Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena

7 April 2017

1 reference

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7 April 2017

Birth of the D-E-A-D box

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Improved free-energy parameters for predictions of RNA duplex stability

7 April 2017

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Probing the mechanisms of DEAD-box proteins as general RNA chaperones: the C-terminal domain of CYT-19 mediates general recognition of RNA.

7 April 2017

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Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone

28 September 2017

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Aptamers come of age - at last

28 September 2017

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The biogenesis and regulation of telomerase holoenzymes

28 September 2017

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The UAA/GAN internal loop motif: a new RNA structural element that forms a cross-strand AAA stack and long-range tertiary interactions

28 September 2017

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T-rich DNA single strands bind to a preformed site on the bacterial cold shock protein Bs-CspB.

28 September 2017

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Structures of regulatory elements in mRNAs.

28 September 2017

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Structure of ribonuclease P--a universal ribozyme.

28 September 2017

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Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule

28 September 2017

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Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker

28 September 2017

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A DEAD-box protein alone promotes group II intron splicing and reverse splicing by acting as an RNA chaperone

28 September 2017

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Eukaryotic Lsm proteins: lessons from bacteria

28 September 2017

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An assembly landscape for the 30S ribosomal subunit

28 September 2017

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Crystal structure of a bacterial ribonuclease P RNA.

28 September 2017

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Single-molecule FRET studies of important intermediates in the nucleocapsid-protein-chaperoned minus-strand transfer step in HIV-1 reverse transcription

28 September 2017

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Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET.

28 September 2017

1 reference

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An abundance of RNA regulators

28 September 2017

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Riboswitches as versatile gene control elements

28 September 2017

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Assays for the RNA chaperone activity of proteins

28 September 2017

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Secondary structure and secondary structure dynamics of DNA hairpins complexed with HIV-1 NC protein

28 September 2017

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Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme

28 September 2017

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Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator

28 September 2017

1 reference

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Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme

28 September 2017

1 reference

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DExD/H-box proteins and their partners: helping RNA helicases unwind

28 September 2017

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A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate

28 September 2017

1 reference

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28 September 2017

Analysis of RNA motifs

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Bacterial cold-shock proteins

28 September 2017

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Probing the structural dynamics of nucleic acids by quantitative time-resolved and equilibrium hydroxyl radical "footprinting".

28 September 2017

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RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo

28 September 2017

1 reference

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28 September 2017

1 reference

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RNA chaperones exist and DEAD box proteins get a life

28 September 2017

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The rate-limiting step in the folding of a large ribozyme without kinetic traps

28 September 2017

1 reference

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HIV-1 nucleocapsid protein as a nucleic acid chaperone: spectroscopic study of its helix-destabilizing properties, structural binding specificity, and annealing activity

28 September 2017

1 reference

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Correlating structural dynamics and function in single ribozyme molecules

28 September 2017

1 reference

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The folding pathway of the genomic hepatitis delta virus ribozyme is dominated by slow folding of the pseudoknots

28 September 2017

1 reference

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The signal recognition particle

28 September 2017

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Rearrangement of structured RNA via branch migration structures catalysed by the highly related DEAD-box proteins p68 and p72.

28 September 2017

1 reference

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Further characterization of the helicase activity of eIF4A. Substrate specificity

28 September 2017

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A universal mode of helix packing in RNA.

28 September 2017

1 reference

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Concerted kinetic folding of a multidomain ribozyme with a disrupted loop-receptor interaction

28 September 2017

1 reference

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Approaching translation at atomic resolution.

28 September 2017

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Escherichia coli CspA-family RNA chaperones are transcription antiterminators

28 September 2017

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Stitching together RNA tertiary architectures

28 September 2017

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28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

New pathways in folding of the Tetrahymena group I RNA enzyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Magnesium-dependent alternative foldings of active and inactive Escherichia coli tRNA(Glu) revealed by chemical probing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

The human immunodeficiency virus type 1 Gag polyprotein has nucleic acid chaperone activity: possible role in dimerization of genomic RNA and placement of tRNA on the primer binding site

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

RNA folding causes secondary structure rearrangement

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Human immunodeficiency virus type 1 nucleocapsid protein promotes efficient strand transfer and specific viral DNA synthesis by inhibiting TAR-dependent self-priming from minus-strand strong-stop DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Vaccinia virions lacking the RNA helicase nucleoside triphosphate phosphohydrolase II are defective in early transcription

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Thermodynamics of base pairing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Human immunodeficiency virus type 1 nucleocapsid protein reduces reverse transcriptase pausing at a secondary structure near the murine leukemia virus polypurine tract

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

HIV-1 nucleocapsid protein induces "maturation" of dimeric retroviral RNA in vitro

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Slow folding kinetics of RNase P RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Multiple substrate binding sites in the ribozyme from Bacillus subtilis RNase P.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Escherichia coli protein analogs StpA and H-NS: regulatory loops, similar and disparate effects on nucleic acid dynamics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

An alternative helix in the 26S rRNA promotes excision and integration of the Tetrahymena intervening sequence

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

An RNA chaperone activity of non-specific RNA binding proteins in hammerhead ribozyme catalysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Antisense RNA control in bacteria, phages, and plasmids

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Protein enhancement of hammerhead ribozyme catalysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Formation of stable and functional HIV-1 nucleoprotein complexes in vitro

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

RNA chaperones and the RNA folding problem

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Solution NMR structure of the major cold shock protein (CspA) from Escherichia coli: identification of a binding epitope for DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Transactivation of the minus-strand DNA transfer by nucleocapsid protein during reverse transcription of the retroviral genome.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Secondary structure model for 23S ribosomal RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Mechanistic studies of ribonucleic acid renaturation by a helix-destabilizing protein

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Secondary structure of 16S ribosomal RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Two interconvertible forms of tryptophanyl sRNA in E. coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Renaturation of transfer ribonucleic acids through site binding of magnesium

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Conformational differences between the biologically active and inactive forms of a transfer ribonucleic acid

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Estimation of Secondary Structure in Ribonucleic Acids

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Rearrangement of the conformation of Escherichia coli 5S RNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Rearrangement of the secondary structure of the secondary structure of tryptophan sRNA in Escherichia coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Free energy of imperfect nucleic acid helices. II. Small hairpin loops

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Oligonucleotide binding to the native and denatured conformers of yeast transfer RNA-3 Lea.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Stability of ribonucleic acid double-stranded helices

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Construction of a yeast strain devoid of mitochondrial introns and its use to screen nuclear genes involved in mitochondrial splicing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

The ATP-dependent interaction of eukaryotic initiation factors with mRNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Kinetics for reaction of a circularized intervening sequence with CU, UCU, CUCU, and CUCUCU: mechanistic implications from the dependence on temperature and on oligomer and Mg2+ concentrations

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Small finger protein of avian and murine retroviruses has nucleic acid annealing activity and positions the replication primer tRNA onto genomic RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Biological catalysis by RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Higher order structural elements in ribosomal RNAs: pseudo-knots and the use of noncanonical pairs

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Renaturation of complementary DNA strands mediated by purified mammalian heterogeneous nuclear ribonucleoprotein A1 protein: implications for a mechanism for rapid molecular assembly

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Alternative secondary structures in the 5' exon affect both forward and reverse self-splicing of the Tetrahymena intervening sequence RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Exon sequences distant from the splice junction are required for efficient self-splicing of the Tetrahymena IVS.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Vaccinia virus RNA helicase: an essential enzyme related to the DE-H family of RNA-dependent NTPases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

An Analysis of the Structure of tRNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Nucleic acid binding properties of Escherichia coli ribosomal protein S1. I. Structure and interactions of binding site I.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Altered topography of 16S RNA in the inactive form of Escherichia coli 30S ribosomal subunits

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Transcription termination at the trp operon attenuators of Escherichia coli and Salmonella typhimurium: RNA secondary structure and regulation of termination

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Pathway-dependent refolding of E. coli 5S rRNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Small angle X-ray scattering reveals a compact intermediate in RNA folding

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Assaying RNA chaperone activity in vivo using a novel RNA folding trap

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Domain structure of the ribozyme from eubacterial ribonuclease P.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Escherichia coli proteins, including ribosomal protein S12, facilitate in vitro splicing of phage T4 introns by acting as RNA chaperones

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Inactivation and reactivation of ribosomal subunits: amino acyl-transfer RNA binding activity of the 30 s subunit of Escherichia coli.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Structure and function of Escherichia coli ribosomes. VI. Mechanism of assembly of 30 s ribosomes studied in vitro.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

N-ethyl maleimide as a probe for the study of functional sites and conformations of 30 S ribosomal subunits

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Conformational changes of transfer ribonucleic acid. Relaxation kinetics of the early melting transition of methionine transfer ribonucleic acid (Escherichia coli)

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

M1 RNA, the RNA subunit of Escherichia coli ribonuclease P, can undergo a pH-sensitive conformational change

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Rapid assembly and disassembly of complementary DNA strands through an equilibrium intermediate state mediated by A1 hnRNP protein

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Acceleration of RNA renaturation by nucleic acid unwinding proteins

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Does 5S RNA function by a switch between two secondary structures?

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Translational control of transcription termination at the attenuator of the Escherichia coli tryptophan operon

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

The paradoxical behavior of a highly structured misfolded intermediate in RNA folding.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Monovalent cations use multiple mechanisms to resolve ribozyme misfolding.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Analysis of Conformational Changes in 16S rRNA During the Course of 30S Subunit Assembly

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

RNA chaperone activity of large ribosomal subunit proteins from Escherichia coli

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Protein displacement by DExH/D "RNA helicases" without duplex unwinding

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Mapping structural differences between 30S ribosomal subunit assembly intermediates

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

An alternative route for the folding of large RNAs: apparent two-state folding by a group II intron ribozyme

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

The stability of helical polynucleotides: base contributions.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Folding problems of the 5' splice site containing the P1 stem of the group I thymidylate synthase intron: substrate binding inhibition in vitro and mis-splicing in vivo

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Productive folding to the native state by a group II intron ribozyme

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Probing the folding landscape of the Tetrahymena ribozyme: commitment to form the native conformation is late in the folding pathway.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Active disruption of an RNA-protein interaction by a DExH/D RNA helicase

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

The DExH protein NPH-II is a processive and directional motor for unwinding RNA

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Fast folding of a ribozyme by stabilizing core interactions: evidence for multiple folding pathways in RNA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Escherichia coli protein StpA stimulates self-splicing by promoting RNA assembly in vitro.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

RNA helicase activity associated with the human p68 protein

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2610265

Kinetic intermediates in RNA folding

28 November 2018

1 reference

12 December 2020

Mg2+-dependent folding of a large ribozyme without kinetic traps

1 reference

12 December 2020

Mispaired P3 region in the hierarchical folding pathway of the Tetrahymena ribozyme

1 reference

12 December 2020

Pathway modulation, circular permutation and rapid RNA folding under kinetic control

1 reference

12 December 2020

Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding

1 reference

12 December 2020

Factor Fraction required for the Synthesis of Bacteriophage Qβ-RNA

1 reference

12 December 2020

Conformational changes of transfer ribonucleic acid. Equilibrium phase diagrams

1 reference

12 December 2020

Rate determining step in the reconstitution of Escherichia coli 30S ribosomal subunits

1 reference

12 December 2020

ATP-dependent unwinding of messenger RNA structure by eukaryotic initiation factors

1 reference

12 December 2020

Multiple Monovalent Ion-dependent Pathways for the Folding of the L-21 Tetrahymena thermophila Ribozyme

1 reference

12 December 2020

Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A

1 reference

12 December 2020

Crystal structure of the RNA component of bacterial ribonuclease P

1 reference

12 December 2020

The self-splicing RNA of Tetrahymena is trapped in a less active conformation by gel purification

1 reference

12 December 2020

Predicting thermodynamic properties of RNA

1 reference

12 December 2020

Kinetic mechanism of the hairpin ribozyme. Identification and characterization of two nonexchangeable conformations

1 reference

12 December 2020

Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity

1 reference

12 December 2020

RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

1 reference

12 December 2020

Kinetic intermediates trapped by native interactions in RNA folding

1 reference

12 December 2020

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

1 reference

12 December 2020

Fast folding mutants of the Tetrahymena group I ribozyme reveal a rugged folding energy landscape

1 reference

12 December 2020

Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: significance for viral replication

1 reference

12 December 2020

Identifiers

DOI

10.2741/2557

1 reference

837865

837865

1 reference

1 reference

1 reference