Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. (Q35441451)

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23 February 2020

title

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins (English)

1 reference

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23 February 2020

1 reference

whole genome sequencing

1 reference

3

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23 February 2020

Nicholas J Croucher

1

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23 February 2020

Andrew J. Page

2

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23 February 2020

Aidan J Delaney

4

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23 February 2020

Jacqueline A Keane

5

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23 February 2020

7

Julian Parkhill

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23 February 2020

6

Stephen D Bentley

1 reference

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23 February 2020

8

Simon R Harris

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23 February 2020

language of work or name

English

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publication date

20 November 2014

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23 February 2020

published in

Nucleic Acids Research

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23 February 2020

volume

43

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23 February 2020

issue

3

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23 February 2020

page(s)

e15

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Creative Commons Attribution 4.0 International

23 February 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

How clonal are bacteria?

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27 July 2018

1 reference

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Statistical methods of DNA sequence analysis: detection of intragenic recombination or gene conversion

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330336

Analyzing the mosaic structure of genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330336

Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study

27 July 2018

1 reference

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progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330336

FastTree 2--approximately maximum-likelihood trees for large alignments

26 September 2018

1 reference

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A comparison of homologous recombination rates in bacteria and archaea.

26 September 2018

1 reference

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GARD: a genetic algorithm for recombination detection

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330336

A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination?

26 September 2018

1 reference

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Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330336

Effect of chromosome location on bacterial mutation rates.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330336

Statistical tests for detecting gene conversion.

26 September 2018

1 reference

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Localized sex in bacteria

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25414349

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Detecting recombination from gene trees

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25414349

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU1196

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25414349%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25414349%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25414349%20AND%20SRC:MED&resulttype=core&format=json