cSSMD: assessing collective activity for addressing off-target effects in genome-scale RNA interference screens. (Q35452056)

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10 February 2020

title

cSSMD: assessing collective activity for addressing off-target effects in genome-scale RNA interference screens (English)

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10 February 2020

1 reference

Xiaohua Douglas Zhang

1

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10 February 2020

Qian Wu

5

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10 February 2020

author name string

Francesca Santini

2

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10 February 2020

Raul Lacson

3

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10 February 2020

Shane D Marine

4

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10 February 2020

Luca Benetti

6

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10 February 2020

Ruojing Yang

7

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10 February 2020

Alex McCampbell

8

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10 February 2020

Joel P Berger

9

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10 February 2020

Dawn M Toolan

10

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10 February 2020

Erica M Stec

11

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10 February 2020

Daniel J Holder

12

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10 February 2020

Keith A Soper

13

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10 February 2020

Joseph F Heyse

14

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10 February 2020

Marc Ferrer

15

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10 February 2020

language of work or name

English

0 references

publication date

16 August 2011

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10 February 2020

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10 February 2020

volume

27

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10 February 2020

issue

20

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10 February 2020

page(s)

2775-2781

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An effective method for controlling false discovery and false nondiscovery rates in genome-scale RNAi screens

10 February 2020

cites work

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The use of SSMD-based false discovery and false nondiscovery rates in genome-scale RNAi screens

27 July 2018

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Assessing the size of gene or RNAi effects in multifactor high-throughput experiments

27 July 2018

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Inhibition of calcineurin-mediated endocytosis and alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors prevents amyloid beta oligomer-induced synaptic disruption

27 July 2018

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Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1

27 July 2018

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A lentivirus-mediated genetic screen identifies dihydrofolate reductase (DHFR) as a modulator of beta-catenin/GSK3 signaling

27 July 2018

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Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication

27 July 2018

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Identification of host proteins required for HIV infection through a functional genomic screen

27 July 2018

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A new method with flexible and balanced control of false negatives and false positives for hit selection in RNA interference high-throughput screening assays

27 July 2018

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3' UTR seed matches, but not overall identity, are associated with RNAi off-targets

27 July 2018

1 reference

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Functional genomics reveals genes involved in protein secretion and Golgi organization

27 July 2018

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Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells

27 July 2018

1 reference

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Interview with Marc Ferrer, Ph.D.. Interview by Vicki Glaser.

27 July 2018

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A method for effectively comparing gene effects in multiple conditions in RNAi and expression-profiling research

26 September 2018

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A probability-based approach for the analysis of large-scale RNAi screens.

26 September 2018

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The use of strictly standardized mean difference for hit selection in primary RNA interference high-throughput screening experiments

26 September 2018

1 reference

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Expression profiling reveals off-target gene regulation by RNAi

26 September 2018

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RNAi technologies: a screen whose time has arrived

26 September 2018

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Characteristic differences between the promoters of intron-containing and intronless ribosomal protein genes in yeast

21 January 2018

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Minimizing the risk of reporting false positives in large-scale RNAi screens

21 January 2018

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A genome-wide RNA interference screen in Drosophila melanogaster cells for new components of the Hh signaling pathway

21 January 2018

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Genome-wide analysis of human kinases in clathrin- and caveolae/raft-mediated endocytosis

21 January 2018

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Genome-wide screens for effective siRNAs through assessing the size of siRNA effects

21 January 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/21846737

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genome-scale RNAi screen for host factors required for HIV replication

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21846737

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTR474

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21846737%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/ZhangSLMWBYMBTSHSHF11

10 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21846737%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

1 reference