Parallel evolution of transcriptome architecture during genome reorganization (Q35493875)

8 August 2017

title

Parallel evolution of transcriptome architecture during genome reorganization (English)

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8 August 2017

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15

Nitin S Baliga

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8 August 2017

Sung Ho Yoon

1

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8 August 2017

David J Reiss

2

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8 August 2017

J Christopher Bare

3

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8 August 2017

Dan Tenenbaum

4

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8 August 2017

Min Pan

5

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8 August 2017

Joseph Slagel

6

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8 August 2017

Robert L Moritz

7

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8 August 2017

Sujung Lim

8

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8 August 2017

Murray Hackett

9

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8 August 2017

Angeli Lal Menon

10

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8 August 2017

Michael W W Adams

11

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8 August 2017

Adam Barnebey

12

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8 August 2017

Steven M Yannone

13

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8 August 2017

John A Leigh

14

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8 August 2017

publication date

12 July 2011

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8 August 2017

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8 August 2017

volume

21

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8 August 2017

issue

11

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8 August 2017

page(s)

1892-1904

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Studying bacterial transcriptomes using RNA-seq

8 August 2017

cites work

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12 July 2018

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12 July 2018

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Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation

12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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Prevalence of transcription promoters within archaeal operons and coding sequences.

12 July 2018

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Directed evolution of ionizing radiation resistance in Escherichia coli

12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

12 July 2018

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Evolution of genome architecture

12 July 2018

1 reference

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Identification of membrane proteins in the hyperthermophilic archaeon pyrococcus furiosus using proteomics and prediction programs

12 July 2018

1 reference

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Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions?

12 July 2018

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The loci of evolution: how predictable is genetic evolution?

12 July 2018

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The organization of the bacterial genome.

12 July 2018

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12 July 2018

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Transcriptome analysis of infection of the archaeon Sulfolobus solfataricus with Sulfolobus turreted icosahedral virus.

12 July 2018

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12 July 2018

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Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate

12 July 2018

1 reference

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12 July 2018

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12 July 2018

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12 July 2018

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Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea

12 July 2018

1 reference

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Insights into the metabolism of elemental sulfur by the hyperthermophilic archaeon Pyrococcus furiosus: characterization of a coenzyme A- dependent NAD(P)H sulfur oxidoreductase

12 July 2018

1 reference

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The evolutionary significance of cis-regulatory mutations

12 July 2018

1 reference

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12 July 2018

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Microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus exposed to gamma irradiation

12 July 2018

1 reference

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The life-cycle of operons

12 July 2018

1 reference

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Disruption of the operon encoding Ehb hydrogenase limits anabolic CO2 assimilation in the archaeon Methanococcus maripaludis

12 July 2018

1 reference

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Defining genes in the genome of the hyperthermophilic archaeon Pyrococcus furiosus: implications for all microbial genomes

12 July 2018

1 reference

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A computational approach for identifying pathogenicity islands in prokaryotic genomes

12 July 2018

1 reference

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The subunit structure and dynamics of the 20S proteasome in chicken skeletal muscle

12 July 2018

1 reference

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Higher-level classification of the Archaea: evolution of methanogenesis and methanogens

12 July 2018

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The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus

12 July 2018

1 reference

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A novel method for accurate operon predictions in all sequenced prokaryotes

12 July 2018

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Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus

12 July 2018

1 reference

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Cold shock of a hyperthermophilic archaeon: Pyrococcus furiosus exhibits multiple responses to a suboptimal growth temperature with a key role for membrane-bound glycoproteins.

12 July 2018

1 reference

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Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea

12 July 2018

1 reference

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Complete Genome Sequence of the Genetically Tractable Hydrogenotrophic Methanogen Methanococcus maripaludis

12 July 2018

1 reference

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12 July 2018

1 reference

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Bacterial oligopeptide-binding proteins

12 July 2018

1 reference

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

12 July 2018

1 reference

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Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ

12 July 2018

1 reference

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Whole-genome DNA microarray analysis of a hyperthermophile and an archaeon: Pyrococcus furiosus grown on carbohydrates or peptides.

12 July 2018

1 reference

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Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach

12 July 2018

1 reference

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Noncoding RNA genes identified in AT-rich hyperthermophiles

12 July 2018

1 reference

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Identification of a lycopene beta-cyclase required for bacteriorhodopsin biogenesis in the archaeon Halobacterium salinarum.

12 July 2018

1 reference

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The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens

12 July 2018

1 reference

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The complete genome of the crenarchaeon Sulfolobus solfataricus P2

12 July 2018

1 reference

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Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context

12 July 2018

1 reference

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Genomic and genetic dissection of an archaeal regulon

12 July 2018

1 reference

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Pyrococcus furiosus: large-scale cultivation and enzyme purification.

12 July 2018

1 reference

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Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology

12 July 2018

1 reference

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brp and blh are required for synthesis of the retinal cofactor of bacteriorhodopsin in Halobacterium salinarum

12 July 2018

1 reference

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Gene context conservation of a higher order than operons.

12 July 2018

1 reference

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Purification and characterization of a membrane-bound hydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus.

12 July 2018

1 reference

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Homologs of small nucleolar RNAs in Archaea

12 July 2018

1 reference

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On the origin of operons and their possible role in evolution toward thermophily

12 July 2018

1 reference

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Bioenergetics of the Archaea

12 July 2018

1 reference

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Transcriptional regulation of genes encoding the selenium-free [NiFe]-hydrogenases in the archaeon Methanococcus voltae involves positive and negative control elements

12 July 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

12 July 2018

1 reference

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Gene structure and protein structure

12 July 2018

1 reference

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Sulfolobus: A new genus of sulfur-oxidizing bacteria living at low pH and high temperature

12 July 2018

1 reference

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Oxidative stress protection and the repair response to hydrogen peroxide in the hyperthermophilic archaeon Pyrococcus furiosus and in related species

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205574

Functional characterization and high-throughput proteomic analysis of interrupted genes in the archaeon Sulfolobus solfataricus

26 September 2018

1 reference

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A predictive model for transcriptional control of physiology in a free living cell.

26 September 2018

1 reference

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Choosing BLAST options for better detection of orthologs as reciprocal best hits.

26 September 2018

1 reference

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Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale

26 September 2018

1 reference

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Distribution of F- and A/V-type ATPases in Thermus scotoductus and other closely related species

26 September 2018

1 reference

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Continuous culture of Methanococcus maripaludis under defined nutrient conditions

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205574

Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae

26 September 2018

1 reference

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Evolution of tuf genes: ancient duplication, differential loss and gene conversion

26 September 2018

1 reference

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Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes.

26 September 2018

1 reference

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Transcriptome Complexity in a Genome-Reduced Bacterium

26 September 2018

1 reference

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Effect of O2 concentrations on Sulfolobus solfataricus P2

15 November 2018

1 reference

12 December 2020

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

1 reference

12 December 2020

The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome

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12 December 2020

Continuous culture of under defined nutrient conditions

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.122218.111

1 reference

8 August 2017

1 reference

8 August 2017

1 reference