VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications. (Q35530484)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

title

VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

main subject

whole genome sequencing

1 reference

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

John C Mu

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

Alexej Abyzov

6

1 reference

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25 February 2020

author name string

Marghoob Mohiyuddin

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

Jian Li

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

Narges Bani Asadi

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

Wing H Wong

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

Hugo Y K Lam

8

1 reference

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25 February 2020

language of work or name

English

0 references

publication date

17 December 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

volume

31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

issue

9

1 reference

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25 February 2020

page(s)

1469-1471

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

25 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

SMaSH: a benchmarking toolkit for human genome variant calling

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

The Database of Genomic Variants: a curated collection of structural variation in the human genome.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

Detecting and annotating genetic variations using the HugeSeq pipeline

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

ART: a next-generation sequencing read simulator.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

AlleleSeq: analysis of allele-specific expression and binding in a network framework

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

Mapping copy number variation by population-scale genome sequencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

RSVSim: an R/Bioconductor package for the simulation of structural variations

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410653

10.1093/BIOINFORMATICS/BTU828

26 September 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/MuMLAGAWL15

25 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

PubMed publication ID

25524895

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25524895%20AND%20SRC:MED&resulttype=core&format=json