Rising to the challenge: accelerated pace of discovery transforms marine virology (Q35552823)

8 August 2017

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title

Rising to the challenge: accelerated pace of discovery transforms marine virology (English)

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8 August 2017

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Jennifer R Brum

1

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8 August 2017

Matthew B Sullivan

series ordinal

2

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8 August 2017

language of work or name

English

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publication date

2 February 2015

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Nature Reviews Microbiology

8 August 2017

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8 August 2017

13

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8 August 2017

3

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8 August 2017

147-159

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https://scigraph.springernature.com/pub.10.1038/nrmicro3404

8 August 2017

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Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations

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High diversity of unknown picorna-like viruses in the sea.

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Genomic analysis of uncultured marine viral communities

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Diversity and population structure of a near-shore marine-sediment viral community.

21 January 2018

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The Pacific Ocean virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology

21 January 2018

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Marine viruses: truth or dare

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From deep sequencing to viral tagging: recent advances in viral metagenomics

21 January 2018

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Are we missing half of the viruses in the ocean?

21 January 2018

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The marine viromes of four oceanic regions

21 January 2018

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Analysis of a viral metagenomic library from 200 m depth in Monterey Bay, California constructed by direct shotgun cloning

21 January 2018

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Metagenomics: read length matters

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A simple and efficient method for concentration of ocean viruses by chemical flocculation

21 January 2018

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Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

21 January 2018

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Sequencing platform and library preparation choices impact viral metagenomes

21 January 2018

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Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method

21 January 2018

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Ocean viruses: rigorously evaluating the metagenomic sample-to-sequence pipeline.

21 January 2018

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The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

21 January 2018

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Cultivated single-stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA-binding stains.

21 January 2018

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Flow cytometric detection of viruses

21 January 2018

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Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses

21 January 2018

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A comparison of methods for counting viruses in aquatic systems

21 January 2018

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Direct counts of viruses in natural waters and laboratory cultures by epifluorescence microscopy

21 January 2018

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Comparison of epifluorescence and transmission electron microscopy for counting viruses in natural marine waters

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21 January 2018

RNA viruses in the sea.

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Diverse circovirus-like genome architectures revealed by environmental metagenomics

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Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads

21 January 2018

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Previously unknown and highly divergent ssDNA viruses populate the oceans

21 January 2018

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Metagenomic analysis of coastal RNA virus communities

21 January 2018

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Amplification methods bias metagenomic libraries of uncultured single-stranded and double-stranded DNA viruses

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Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA.

21 January 2018

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The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

21 January 2018

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The global virome: not as big as we thought?

21 January 2018

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21 January 2018

Global phage diversity

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Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses

21 January 2018

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Metavir: a web server dedicated to virome analysis

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Artificial neural networks trained to detect viral and phage structural proteins

21 January 2018

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Twelve previously unknown phage genera are ubiquitous in global oceans

21 January 2018

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Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

21 January 2018

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21 January 2018

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Viruses and Nutrient Cycles in the Sea

21 January 2018

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Exploring the Vast Diversity of Marine Viruses

21 January 2018

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Transcription of a 'photosynthetic' T4-type phage during infection of a marine cyanobacterium

21 January 2018

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Photosynthesis genes in marine viruses yield proteins during host infection

21 January 2018

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Modeling the fitness consequences of a cyanophage-encoded photosynthesis gene

21 January 2018

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Marine ecosystems: bacterial photosynthesis genes in a virus

21 January 2018

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Metabolic reprogramming by viruses in the sunlit and dark ocean

21 January 2018

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Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome

21 January 2018

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Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

21 January 2018

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Transfer of photosynthesis genes to and from Prochlorococcus viruses

21 January 2018

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A supervised learning approach for taxonomic classification of core-photosystem-II genes and transcripts in the marine environment

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3404

Sulfur oxidation genes in diverse deep-sea viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Comparative metagenomic analyses reveal viral-induced shifts of host metabolism towards nucleotide biosynthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Comparative metagenomics of microbial traits within oceanic viral communities

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3404

Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3404

Fake virus particles generated by fluorescence microscopy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Bacterial vesicles in marine ecosystems

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3404

Genomic island variability facilitates Prochlorococcus-virus coexistence

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3404

Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3404

Rapid diversification of coevolving marine Synechococcus and a virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Abundant SAR11 viruses in the ocean.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3404

Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3404

Archaeal dominance in the mesopelagic zone of the Pacific Ocean

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3404

Viruses of the Archaea: a unifying view

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Analysis of the first genome of a hyperthermophilic marine virus-like particle, PAV1, isolated from Pyrococcus abyssi

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Community genomics among stratified microbial assemblages in the ocean's interior

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Expanding the marine virosphere using metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Tales from a thousand and one phages

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Probing individual environmental bacteria for viruses by using microfluidic digital PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Contrasting life strategies of viruses that infect photo- and heterotrophic bacteria, as revealed by viral tagging

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Viral tagging reveals discrete populations in Synechococcus viral genome sequence space.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Statistical structure of host-phage interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Phage-bacteria infection networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Contrasting genomic patterns and infection strategies of two co-existing Bacteroidetes podovirus genera.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

21 January 2018

Giovannoni et al. reply

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

SAR11 viruses and defensive host strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Viral and microbial community dynamics in four aquatic environments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Gene-centric approach to integrating environmental genomics and biogeochemical models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Explaining microbial genomic diversity in light of evolutionary ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Seasonality and monthly dynamics of marine myovirus communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

A holistic approach to marine eco-systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Short-term observations of marine bacterial and viral communities: patterns, connections and resilience

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Marine cyanophages infecting oceanic and coastal strains of Synechococcus: abundance, morphology, cross-infectivity and growth characteristics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Thymidine incorporation as a measure of heterotrophic bacterioplankton production in marine surface waters: Evaluation and field results

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Depth-stratified functional and taxonomic niche specialization in the 'core' and 'flexible' Pacific Ocean Virome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3404

Membrane vesicles in natural environments: a major challenge in viral ecology

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3404

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Microbial ecology of expanding oxygen minimum zones

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3404

Enumeration of marine viruses in culture and natural samples by flow cytometry

31 March 2020

1 reference

12 December 2020

Population dynamics of chesapeake bay virioplankton: total-community analysis by pulsed-field gel electrophoresis

1 reference

12 December 2020

Ocean viruses and their effects on microbial communities and biogeochemical cycles.

1 reference

12 December 2020

Resistance to co-occurring phages enables marine synechococcus communities to coexist with cyanophages abundant in seawater.

1 reference

12 December 2020

Occurrence of a sequence in marine cyanophages similar to that of T4 g20 and its application to PCR-based detection and quantification techniques.

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRMICRO3404

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Dimensions Publication ID

8 August 2017

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