Probe-Directed Degradation (PDD) for Flexible Removal of Unwanted cDNA Sequences from RNA-Seq Libraries (Q35591225)

9 August 2017

Probe-Directed Degradation (PDD) for Flexible Removal of Unwanted cDNA Sequences from RNA-Seq Libraries (English)

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9 August 2017

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1

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7 June 2020

Nikolay Shirokikh

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7 June 2020

Thomas Preiss

3

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7 June 2020

author name string

Stuart K Archer

1

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9 August 2017

Nikolay E Shirokikh

2

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9 August 2017

Thomas Preiss

3

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9 August 2017

1 April 2015

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Current protocols in human genetics / editorial board, Nicholas C, Dracapoli ... [et al.]

9 August 2017

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7 June 2020

volume

85

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7 June 2020

page(s)

11.15.1-11.15.36

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Isolation, characterization and molecular cloning of duplex-specific nuclease from the hepatopancreas of the Kamchatka crab

7 June 2020

cites work

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Selective and flexible depletion of problematic sequences from RNA-seq libraries at the cDNA stage.

21 January 2018

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Isolation and characterization of a thermostable RNA ligase 1 from a Thermus scotoductus bacteriophage TS2126 with good single-stranded DNA ligation properties

21 January 2018

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DSN depletion is a simple method to remove selected transcripts from cDNA populations

21 January 2018

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Normalization of full-length-enriched cDNA.

21 January 2018

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Ion Torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method.

21 January 2018

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Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries

21 January 2018

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Depletion of unwanted nucleic acid templates by selective cleavage: LNAzymes, catalytically active oligonucleotides containing locked nucleic acids, open a new window for detecting rare microbial community members

21 January 2018

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An efficient strategy to isolate full-length cDNAs based on an mRNA cap retention procedure (CAPture).

21 January 2018

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Rare target enrichment for ultrasensitive PCR detection using cot-rehybridization and duplex-specific nuclease

21 January 2018

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The current status of cDNA cloning

21 January 2018

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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

21 January 2018

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The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

21 January 2018

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Molecular cloning of a ribonuclease H (RNase HI) gene from an extreme thermophileThermus thermophilusHB8: a thermostable RNase H can functionally replace theEscherichia colienzymein vivo

21 January 2018

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Evaluating bias-reducing protocols for RNA sequencing library preparation

21 January 2018

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Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability.

21 January 2018

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An 'equalized cDNA library' by the reassociation of short double-stranded cDNAs

21 January 2018

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Comprehensive comparative analysis of strand-specific RNA sequencing methods

21 January 2018

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Organism-specific rRNA capture system for application in next-generation sequencing

21 January 2018

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Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides

21 January 2018

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Purification and characterization of Escherichia coli RNase I. Comparisons with RNase M.

21 January 2018

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A new method for stranded whole transcriptome RNA-seq

21 January 2018

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Selective depletion of rRNA enables whole transcriptome profiling of archival fixed tissue

21 January 2018

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Bacterial mRNA purification by magnetic capture-hybridization method.

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471142905.HG1115S85

Kamchatka crab duplex-specific nuclease-mediated transcriptome subtraction method for identifying long cDNAs of differentially expressed genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142905.HG1115S85

Prokaryotic RNA preparation methods useful for high density array analysis: comparison of two approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142905.HG1115S85

A novel method for SNP detection using a new duplex-specific nuclease from crab hepatopancreas

21 January 2018

1 reference

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cDNA normalization by hydroxyapatite chromatography to enrich transcriptome diversity in RNA-seq applications

21 January 2018

1 reference

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T4-induced RNA ligase joins single-stranded oligoribonucleotides

21 January 2018

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Structure and mechanism of T4 polynucleotide kinase: an RNA repair enzyme

21 January 2018

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Terminator oligo blocking efficiently eliminates rRNA from Drosophila small RNA sequencing libraries

21 January 2018

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Properties of cloned and expressed human RNase H1.

21 January 2018

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Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq

21 January 2018

1 reference

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10.1002/0471142905.HG1115S85

21 January 2018

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25827346%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

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