Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila (Q35624734)

9 August 2017

title

Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila (English)

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9 August 2017

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6

Michael Rosbash

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author name string

Yevgenia L Khodor

1

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9 August 2017

Joseph Rodriguez

2

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9 August 2017

Katharine C Abruzzi

3

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9 August 2017

Chih-Hang Anthony Tang

4

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9 August 2017

Michael T Marr

5

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9 August 2017

publication date

1 December 2011

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9 August 2017

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9 August 2017

volume

25

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9 August 2017

issue

23

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9 August 2017

page(s)

2502-2512

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Pause locally, splice globally

9 August 2017

cites work

1 reference

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The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing

12 July 2018

1 reference

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Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Splicing-dependent RNA polymerase pausing in yeast

12 July 2018

1 reference

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U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

First come, first served revisited: factors affecting the same alternative splicing event have different effects on the relative rates of intron removal

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

"Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions

12 July 2018

1 reference

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Co-transcriptional splicing of constitutive and alternative exons

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

TopHat: discovering splice junctions with RNA-Seq

12 July 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

12 July 2018

1 reference

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Genome-wide identification of targets of the drosha-pasha/DGCR8 complex

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

A 5' splice site enhances the recruitment of basal transcription initiation factors in vivo.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

The transcriptional cycle of HIV-1 in real-time and live cells.

12 July 2018

1 reference

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SR proteins function in coupling RNAP II transcription to pre-mRNA splicing.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

In vivo commitment to yeast cotranscriptional splicing is sensitive to transcription elongation mutants

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Functional coupling of RNAP II transcription to spliceosome assembly

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Assaying the Drosophila negative feedback loop with RNA interference in S2 cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Subdivision of large introns in Drosophila by recursive splicing at nonexonic elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

RNA polymerase II carboxy-terminal domain phosphorylation is required for cotranscriptional pre-mRNA splicing and 3'-end formation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Biochemical analysis of TREX complex recruitment to intronless and intron-containing yeast genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

A slow RNA polymerase II affects alternative splicing in vivo

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

U1 snRNA associates with TFIIH and regulates transcriptional initiation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

On the importance of being co-transcriptional

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Integrating mRNA processing with transcription

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Antagonistic effects of T-Ag and VP16 reveal a role for RNA pol II elongation on alternative splicing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Capping, splicing, and 3' processing are independently stimulated by RNA polymerase II: different functions for different segments of the CTD

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

In situ transcription and splicing in the Balbiani ring 3 gene

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Redefinition of exon 7 in the COL1A1 gene of type I collagen by an intron 8 splice-donor-site mutation in a form of osteogenesis imperfecta: influence of intron splice order on outcome of splice-site mutation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

The C-terminal domain of RNA polymerase II couples mRNA processing to transcription

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Order of intron removal during splicing of endogenous adenine phosphoribosyltransferase and dihydrofolate reductase pre-mRNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Assembly and disassembly of spliceosomes along a specific pre-messenger RNP fiber.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Physical Isolation of Nascent RNA Chains Transcribed by RNA Polymerase II: Evidence for Cotranscriptional Splicing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Splice site selection, rate of splicing, and alternative splicing on nascent transcripts

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

A mutation in the largest subunit of RNA polymerase II alters RNA chain elongation in vitro.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Splicing precedes polyadenylation during Drosophila E74A transcription

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Functional interaction of yeast pre-mRNA 3' end processing factors with RNA polymerase II.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

The intranuclear site of excision of each intron in Balbiani ring 3 pre-mRNA is influenced by the time remaining to transcription termination and different excision efficiencies for the various introns.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Splicing of Balbiani ring 1 gene pre-mRNA occurs simultaneously with transcription.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243060

Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells

23 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22156210

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Dawdling polymerases allow introns time to splice

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22156210

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GAD.178962.111

1 reference

9 August 2017

1 reference

9 August 2017

1 reference