Visual analysis of concerted cleavage by type IIF restriction enzyme SfiI in subsecond time region (Q35627759)

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19 January 2020

title

Visual analysis of concerted cleavage by type IIF restriction enzyme SfiI in subsecond time region (English)

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19 January 2020

1

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19 January 2020

author name string

Jamie L Gilmore

2

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19 January 2020

Shige H Yoshimura

3

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19 January 2020

Robert M Henderson

4

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19 January 2020

Yuri L Lyubchenko

5

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19 January 2020

Kunio Takeyasu

6

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19 January 2020

language of work or name

English

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publication date

20 December 2011

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19 January 2020

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19 January 2020

volume

101

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19 January 2020

issue

12

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19 January 2020

page(s)

2992-2998

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Single-molecule dynamics of the DNA-EcoRII protein complexes revealed with high-speed atomic force microscopy.

19 January 2020

cites work

1 reference

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Dynamics of nucleosomes revealed by time-lapse atomic force microscopy

12 July 2018

1 reference

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Differences between Ca2+ and Mg2+ in DNA binding and release by the SfiI restriction endonuclease: implications for DNA looping

12 July 2018

1 reference

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Dissecting protein-induced DNA looping dynamics in real time

12 July 2018

1 reference

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AFM for analysis of structure and dynamics of DNA and protein-DNA complexes

12 July 2018

1 reference

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A switch in the mechanism of communication between the two DNA-binding sites in the SfiI restriction endonuclease

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

Direct visualization of the EcoRII-DNA triple synaptic complex by atomic force microscopy

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping

12 July 2018

1 reference

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Dynamics of synaptic SfiI-DNA complex: single-molecule fluorescence analysis

12 July 2018

1 reference

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Probing Interactions within the synaptic DNA-SfiI complex by AFM force spectroscopy

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

Effect of DNA supercoiling on the geometry of holliday junctions

12 July 2018

1 reference

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Fast-scanning atomic force microscopy reveals the ATP/ADP-dependent conformational changes of GroEL.

12 July 2018

1 reference

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Site-specific labeling of supercoiled DNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

DNA strand arrangement within the SfiI-DNA complex: atomic force microscopy analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

Diversity of type II restriction endonucleases that require two DNA recognition sites

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

Direct real-time molecular scale visualisation of the degradation of condensed DNA complexes exposed to DNase I

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

Silatrane-based surface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

A high-speed atomic force microscope for studying biological macromolecules.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

SfiI endonuclease activity is strongly influenced by the non-specific sequence in the middle of its recognition site

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

Specificity from the synapsis of DNA elements by the Sfi I endonuclease

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

DNA looping by the Sfi I restriction endonuclease.

12 July 2018

1 reference

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Direct visualization of dynamic protein-DNA interactions with a dedicated atomic force microscope

12 July 2018

1 reference

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Recombination by resolvase to analyse DNA communications by the SfiI restriction endonuclease

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

Changing endonuclease EcoRII Tyr308 to Phe abolishes cleavage but not recognition: possible homology with the Int-family of recombinases

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

A type II restriction endonuclease with an eight nucleotide specificity fromStreptomyces fimbriatus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244053

DNA excision by the Sfi I restriction endonuclease.

25 September 2018

1 reference

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Molecular dynamics of DNA and nucleosomes in solution studied by fast-scanning atomic force microscopy

25 September 2018

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12 December 2020

Dynamics of DNA loop capture by the SfiI restriction endonuclease on supercoiled and relaxed DNA

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12 December 2020

DNA topoisomerase and recombinase activities in Nae I restriction endonuclease

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12 December 2020

The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence

1 reference

12 December 2020

DNA cleavage at two recognition sites by the SfiI restriction endonuclease: salt dependence of cis and trans interactions between distant DNA sites

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12 December 2020

Phosphorothioate substrates for the SfiI restriction endonuclease

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12 December 2020

Direct observation of DNA translocation and cleavage by the EcoKI endonuclease using atomic force microscopy

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12 December 2020

Fast-scanning atomic force microscopy reveals the molecular mechanism of DNA cleavage by ApaI endonuclease

1 reference

12 December 2020

DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites

1 reference

12 December 2020

10.1016/J.BPJ.2011.09.064

Identifiers

DOI

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19 January 2020

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19 January 2020

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