Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module (Q35660386)

25259920

9 August 2017

title

Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module (English)

1 reference

9 August 2017

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25259920%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

author name string

Alesia N McKeown

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25259920%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Jamie T Bridgham

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25259920%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Dave W Anderson

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25259920%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Michael N Murphy

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25259920%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Joseph W Thornton

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25259920%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

language of work or name

English

0 references

publication date

1 September 2014

1 reference

9 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25259920%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

volume

159

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3 June 2020

issue

1

1 reference

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3 June 2020

page(s)

58-68

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25259920%20AND%20SRC:MED&resulttype=core&format=json

A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity

3 June 2020

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The glucocorticoid receptor dimer interface allosterically transmits sequence-specific DNA signals

27 July 2018

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Stability-mediated epistasis constrains the evolution of an influenza protein

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Evolution of minimal specificity and promiscuity in steroid hormone receptors

27 July 2018

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Evolutionary transitions to new DNA methyltransferases through target site expansion and shrinkage

27 July 2018

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Protein modularity, cooperative binding, and hybrid regulatory states underlie transcriptional network diversification

27 July 2018

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Structural basis for nuclear hormone receptor DNA binding.

27 July 2018

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Evolution of a derived protein-protein interaction between HoxA11 and Foxo1a in mammals caused by changes in intramolecular regulation

27 July 2018

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Extensive DNA-binding specificity divergence of a conserved transcription regulator

27 July 2018

1 reference

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Evolution of steroid receptors from an estrogen-sensitive ancestral receptor

27 July 2018

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Evolution of Transcription Networks — Lessons from Yeasts

27 July 2018

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Analyzing protein structure and function using ancestral gene reconstruction

27 July 2018

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Genomic actions of estrogen receptor alpha: what are the targets and how are they regulated?

27 July 2018

1 reference

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DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity

27 July 2018

1 reference

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Is genetic evolution predictable?

27 July 2018

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Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

27 July 2018

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The evolutionary significance of cis-regulatory mutations

27 July 2018

1 reference

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Nuclear receptor structure: implications for function

27 July 2018

1 reference

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Structure of the progesterone receptor-deoxyribonucleic acid complex: novel interactions required for binding to half-site response elements

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4447315

Protein stability promotes evolvability

27 July 2018

1 reference

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Resurrecting ancient genes: experimental analysis of extinct molecules

27 July 2018

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Altering the sequence specificity of HaeIII methyltransferase by directed evolution using in vitro compartmentalization

27 July 2018

1 reference

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Recognition of specific DNA sequences.

27 July 2018

1 reference

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Interaction of steroid hormone receptors with the transcription initiation complex

27 July 2018

1 reference

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The crystal structure of the estrogen receptor DNA-binding domain bound to DNA: how receptors discriminate between their response elements

27 July 2018

1 reference

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Natural Selection and the Concept of a Protein Space

27 July 2018

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On the specificity of DNA-protein interactions

27 July 2018

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DNA regulatory elements for steroid hormones

27 July 2018

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27 July 2018

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DNA binding specificity of mutant glucocorticoid receptor DNA-binding domains

27 July 2018

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Beyond zinc fingers: steroid hormone receptors have a novel structural motif for DNA recognition

27 July 2018

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27 July 2018

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DNA binding analysis of glucocorticoid receptor specificity mutants

27 July 2018

1 reference

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Determinants for DNA-binding site recognition by the glucocorticoid receptor.

27 July 2018

1 reference

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27 July 2018

1 reference

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Glucocorticoid receptor-DNA interactions: binding energetics are the primary determinant of sequence-specific transcriptional activity

25 September 2018

1 reference

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Regulatory evolution through divergence of a phosphoswitch in the transcription factor CEBPB.

25 September 2018

1 reference

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Origins of specificity in protein-DNA recognition.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4447315

Neutralism and selectionism: a network-based reconciliation

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4447315

Evolution of eukaryotic transcription circuits

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4447315

Determinants of cell- and gene-specific transcriptional regulation by the glucocorticoid receptor

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4447315

Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4447315

Gene regulatory network growth by duplication

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4447315

Analysis of estrogen response element binding by genetically selected steroid receptor DNA binding domain mutants exhibiting altered specificity and enhanced affinity.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4447315

Cooperativity and specificity in the interactions between DNA and the glucocorticoid receptor DNA-binding domain

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4447315

Conformational Dynamics and Molecular Recognition: Backbone Dynamics of the Estrogen Receptor DNA-binding Domain

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4447315

Structure and Dynamics of the Glucocorticoid Receptor DNA-Binding Domain: Comparison of Wild Type and a Mutant with Altered Specificity†

15 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4447315

Determinants of DNA sequence specificity of the androgen, progesterone, and glucocorticoid receptors: evidence for differential steroid receptor response elements

15 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25259920

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The estrogen receptor binds tightly to its responsive element as a ligand-induced homodimer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25259920

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Thermodynamics of the glucocorticoid receptor-DNA interaction: Binding of wild-type GR DBD to different response elements

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25259920

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2014.09.003

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25259920%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25259920%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

25259920

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25259920%20AND%20SRC:MED&resulttype=core&format=json