The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes. (Q35756522)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22081017%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

title

The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes (English)

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16 January 2020

3

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16 January 2020

Carlos Bustamante

6

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16 January 2020

author name string

Lacramioara Bintu

1

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16 January 2020

Marta Kopaczynska

2

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16 January 2020

Lucyna Lubkowska

4

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16 January 2020

Mikhail Kashlev

5

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16 January 2020

language of work or name

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13 November 2011

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Nature Structural & Molecular Biology

16 January 2020

published in

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16 January 2020

volume

18

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16 January 2020

issue

12

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16 January 2020

page(s)

1394-1399

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https://scigraph.springernature.com/pub.10.1038/nsmb.2164

16 January 2020

exact match

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cites work

Nascent transcript sequencing visualizes transcription at nucleotide resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

A polar barrier to transcription can be circumvented by remodeler-induced nucleosome translocation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Efficient and rapid nucleosome traversal by RNA polymerase II depends on a combination of transcript elongation factors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

BRG1 helps RNA polymerase II to overcome a nucleosomal barrier during elongation, in vivo

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Histone Sin mutations promote nucleosome traversal and histone displacement by RNA polymerase II.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

RNA polymerase complexes cooperate to relieve the nucleosomal barrier and evict histones

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Histone dynamics during transcription: exchange of H2A/H2B dimers and H3/H4 tetramers during pol II elongation.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Nucleosome displacement in transcription

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Nucleosomes containing the histone variant H2A.Bbd organize only 118 base pairs of DNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Measurement of histone-DNA interaction free energy in nucleosomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Histone H2A/H2B dimer exchange by ATP-dependent chromatin remodeling activities

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

FACT facilitates transcription-dependent nucleosome alteration

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Dynamics of site juxtaposition in supercoiled DNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Crystal structure of the nucleosome core particle at 2.8 A resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Scanning force microscopy of DNA deposited onto mica: equilibration versus kinetic trapping studied by statistical polymer chain analysis.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Histones H2A/H2B inhibit the interaction of transcription factor IIIA with the Xenopus borealis somatic 5S RNA gene in a nucleosome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Mechanism of histone survival during transcription by RNA polymerase II.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Replication-independent core histone dynamics at transcriptionally active loci in vivo

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

The histone core complex: an octamer assembled by two sets of protein-protein interactions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Synergistic action of RNA polymerases in overcoming the nucleosomal barrier.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

A new fluorescence resonance energy transfer approach demonstrates that the histone variant H2AZ stabilizes the histone octamer within the nucleosome

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

DNA translocation and nucleosome remodeling assays by the RSC chromatin remodeling complex.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Bacterial polymerase and yeast polymerase II use similar mechanisms for transcription through nucleosomes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Accurate length determination of DNA molecules visualized by atomic force microscopy: evidence for a partial B- to A-form transition on mica.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Dynamics of Replication-Independent Histone Turnover in Budding Yeast

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3279329

Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication

15 November 2018

1 reference

A histone octamer can step around a transcribing polymerase without leaving the template

31 March 2020

1 reference

Mechanism of transcription through the nucleosome by eukaryotic RNA polymerase

31 March 2020

1 reference

A nucleosome core is transferred out of the path of a transcribing polymerase

31 March 2020

1 reference

The nature of the nucleosomal barrier to transcription: direct observation of paused intermediates by electron cryomicroscopy

31 March 2020

1 reference

Facilitated transcription through the nucleosome at high ionic strength occurs via a histone octamer transfer mechanism

31 March 2020

1 reference

Nature of the nucleosomal barrier to RNA polymerase II

31 March 2020

1 reference

Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II

31 March 2020

1 reference

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NSMB.2164

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22081017%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22081017%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference