Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution (Q35757386)

10 August 2017

Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution (English)

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10 August 2017

Daniel Ramsköld

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Liudmila Matskova

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Liudmila Matskova

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Rickard Sandberg

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Rickard Sandberg

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author name string

Pelin Sahlén

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10 August 2017

Ilgar Abdullayev

2

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10 August 2017

Nemanja Rilakovic

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10 August 2017

Britta Lötstedt

6

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10 August 2017

Thomas J Albert

7

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10 August 2017

Joakim Lundeberg

8

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10 August 2017

3 August 2015

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10 August 2017

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10 August 2017

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10 August 2017

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https://scigraph.springernature.com/pub.10.1186/s13059-015-0727-9

10 August 2017

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cites work

Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C.

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The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements.

2 October 2017

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Gateways to the FANTOM5 promoter level mammalian expression atlas

2 October 2017

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Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C.

2 October 2017

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Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons

2 October 2017

1 reference

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Transcriptional enhancers: from properties to genome-wide predictions

2 October 2017

1 reference

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Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations

2 October 2017

1 reference

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A high-resolution map of the three-dimensional chromatin interactome in human cells

2 October 2017

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The pluripotent genome in three dimensions is shaped around pluripotency factors

2 October 2017

1 reference

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Predicting the molecular complexity of sequencing libraries

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Efficient and comprehensive representation of uniqueness for next-generation sequencing by minimum unique length analyses

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Genome-wide quantitative enhancer activity maps identified by STARR-seq

2 October 2017

1 reference

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

2 October 2017

1 reference

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Generation of mouse ES cell lines engineered for the forced induction of transcription factors.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

An oestrogen-receptor-α-bound human chromatin interactome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Histone modifications at human enhancers reflect global cell-type-specific gene expression

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

ChIP-seq accurately predicts tissue-specific activity of enhancers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Alternative isoform regulation in human tissue transcriptomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

High-resolution mapping and characterization of open chromatin across the genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Genome-wide mapping of in vivo protein-DNA interactions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Active genes dynamically colocalize to shared sites of ongoing transcription

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Capturing chromosome conformation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Error and attack tolerance of complex networks

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

An enhancer stimulates transcription in trans when attached to the promoter via a protein bridge

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4557751

10.1186/S13059-015-0727-9

25 September 2018

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10 August 2017

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1 reference

10 August 2017

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