Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells (Q38348005)

2 September 2017

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells (English)

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2 September 2017

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Jennifer A Mitchell

8

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Peter Fraser

object named as

Peter Fraser

16

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author name string

Stefan Schoenfelder

1

1 reference

2 September 2017

Tom Sexton

2

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2 September 2017

Lyubomira Chakalova

3

1 reference

2 September 2017

Nathan F Cope

4

1 reference

2 September 2017

Alice Horton

5

1 reference

2 September 2017

Simon Andrews

6

1 reference

2 September 2017

Sreenivasulu Kurukuti

7

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2 September 2017

David Umlauf

9

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2 September 2017

Daniela S Dimitrova

10

1 reference

2 September 2017

Christopher H Eskiw

11

1 reference

2 September 2017

Yanquan Luo

12

1 reference

2 September 2017

Chia-Lin Wei

13

1 reference

2 September 2017

Yijun Ruan

14

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2 September 2017

James J Bieker

15

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2 September 2017

language of work or name

English

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publication date

13 December 2009

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2 September 2017

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2 September 2017

42

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2 September 2017

53-61

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2 September 2017

1

1 reference

https://scigraph.springernature.com/pub.10.1038/ng.496

2 September 2017

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Association between active genes occurs at nuclear speckles and is modulated by chromatin environment

6 September 2017

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A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations

6 September 2017

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6 September 2017

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Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription

6 September 2017

1 reference

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Gene regulation through nuclear organization.

6 September 2017

1 reference

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Myc dynamically and preferentially relocates to a transcription factory occupied by Igh

6 September 2017

1 reference

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Nuclear organization of the genome and the potential for gene regulation

6 September 2017

1 reference

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Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions

6 September 2017

1 reference

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Phosphorylation and functions of the RNA polymerase II CTD

6 September 2017

1 reference

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Stochastic mRNA synthesis in mammalian cells

6 September 2017

1 reference

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Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

6 September 2017

1 reference

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Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

6 September 2017

1 reference

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Transcriptional pulsing of a developmental gene

6 September 2017

1 reference

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Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations

6 September 2017

1 reference

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Coregulated human globin genes are frequently in spatial proximity when active

6 September 2017

1 reference

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A global map of p53 transcription-factor binding sites in the human genome

6 September 2017

1 reference

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A global role for EKLF in definitive and primitive erythropoiesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

The erythroid phenotype of EKLF-null mice: defects in hemoglobin metabolism and membrane stability

6 September 2017

1 reference

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Interchromosomal associations between alternatively expressed loci

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes

6 September 2017

1 reference

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The active spatial organization of the beta-globin locus requires the transcription factor EKLF

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Active genes dynamically colocalize to shared sites of ongoing transcription

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Tissue-specific spatial organization of genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Capturing chromosome conformation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Structure and function of the nucleolus

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Processing of endogenous pre-mRNAs in association with SC-35 domains is gene specific

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Silencing of human fetal globin expression is impaired in the absence of the adult beta-globin gene activator protein EKLF.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Nonrandom gene organization: structural arrangements of specific pre-mRNA transcription and splicing with SC-35 domains

6 September 2017

1 reference

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Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleus

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Lethal beta-thalassaemia in mice lacking the erythroid CACCC-transcription factor EKLF

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Defective haematopoiesis in fetal liver resulting from inactivation of the EKLF gene

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

A novel, erythroid cell-specific murine transcription factor that binds to the CACCC element and is related to the Krüppel family of nuclear proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Virus Infection Induces NF-kappaB-dependent interchromosomal associations mediating monoallelic IFN-beta gene expression

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Non-random subcellular distribution of variant EKLF in erythroid cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Long-range chromosomal interactions regulate the timing of the transition between poised and active gene expression

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Chromatin-binding in vivo of the erythroid kruppel-like factor, EKLF, in the murine globin loci.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Dynamic repositioning of genes in the nucleus of lymphocytes preparing for cell division

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Visualization of focal sites of transcription within human nuclei.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

The role of EKLF in human beta-globin gene competition.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

A dominant control region from the human beta-globin locus conferring integration site-independent gene expression

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Transcription factories are nuclear subcompartments that remain in the absence of transcription

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

RNAi components are required for nuclear clustering of Polycomb group response elements.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Nucleolar clustering of dispersed tRNA genes.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Regional specialization in human nuclei: visualization of discrete sites of transcription by RNA polymerase III.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Active RNA polymerases are localized within discrete transcription "factories' in human nuclei

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237402

Single-cell gene expression profiling

3 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20010836

12 December 2020

inferred from PubMed ID database lookup

Major erythrocyte membrane protein genes in EKLF-deficient mice

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20010836

12 December 2020

inferred from PubMed ID database lookup

Multicolor 3D Fluorescence In Situ Hybridization for Imaging Interphase Chromosomes

1 reference

7 January 2021

Chromosome conformation capture.

1 reference

7 January 2021

Effects of altered gene order or orientation of the locus control region on human beta-globin gene expression in mice.

1 reference

7 January 2021

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

1 reference

7 January 2021

TFBS: Computational framework for transcription factor binding site analysis

1 reference

7 January 2021

Identifiers

DOI

10.1038/NG.496

1 reference

release_c6nykojobzhr7oay2flkqgarcq

2 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/c6nykojobzhr7oay2flkqgarcq

24 November 2022

mapped directly with Wikidata item

1 reference

2 September 2017

1 reference