Environmental regulation operating at the promoter clearance step of bacterial transcription. (Q35783058)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17504942%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

title

Environmental regulation operating at the promoter clearance step of bacterial transcription (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17504942%20AND%20SRC:MED&resulttype=core&format=json

environmental regulation in biological systems

30 December 2019

main subject

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1

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30 December 2019

author name string

Jayaraman Gowrishankar

series ordinal

2

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30 December 2019

language of work or name

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1 May 2007

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30 December 2019

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30 December 2019

volume

21

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30 December 2019

issue

10

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30 December 2019

page(s)

1258-1272

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Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

30 December 2019

cites work

1 reference

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Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

12 July 2018

1 reference

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Breaking barriers to transcription elongation

12 July 2018

1 reference

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Initial transcribed sequence mutations specifically affect promoter escape properties

12 July 2018

1 reference

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A pathway branching in transcription initiation in Escherichia coli

12 July 2018

1 reference

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The cotranscribed Salmonella enterica sv. Typhi tsx and impX genes encode opposing nucleoside-specific import and export proteins

12 July 2018

1 reference

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DNA looping-mediated repression by histone-like protein H-NS: specific requirement of Esigma70 as a cofactor for looping

12 July 2018

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The yeaS (leuE) gene of Escherichia coli encodes an exporter of leucine, and the Lrp protein regulates its expression.

12 July 2018

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Characterization of methionine export in Corynebacterium glutamicum

12 July 2018

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Osmosensitivity associated with insertions in argP (iciA) or glnE in glutamate synthase-deficient mutants of Escherichia coli.

12 July 2018

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Evidence for an arginine exporter encoded by yggA (argO) that is regulated by the LysR-type transcriptional regulator ArgP in Escherichia coli

12 July 2018

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The regulation of bacterial transcription initiation

12 July 2018

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New ubiquitous translocators: amino acid export by Corynebacterium glutamicum and Escherichia coli

12 July 2018

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Promoter clearance and escape in prokaryotes

12 July 2018

1 reference

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Export of L-isoleucine from Corynebacterium glutamicum: a two-gene-encoded member of a new translocator family.

12 July 2018

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Bacterial amino acid transport proteins: occurrence, functions, and significance for biotechnological applications

12 July 2018

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Structural basis for H-NS-mediated trapping of RNA polymerase in the open initiation complex at the rrnB P1.

12 July 2018

1 reference

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In vivo expression from the RpoS-dependent P1 promoter of the osmotically regulated proU operon in Escherichia coli and Salmonella enterica serovar Typhimurium: activation by rho and hns mutations and by cold stress

12 July 2018

1 reference

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L-threonine export: use of peptides to identify a new translocator from Corynebacterium glutamicum

12 July 2018

1 reference

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Restructuring of an RNA polymerase holoenzyme elongation complex by lambdoid phage Q proteins

12 July 2018

1 reference

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Conformational switching of Escherichia coli RNA polymerase-promoter binary complex is facilitated by elongation factor GreA and GreB.

12 July 2018

1 reference

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The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

The bacterial DNA-binding protein H-NS represses ribosomal RNA transcription by trapping RNA polymerase in the initiation complex

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Antitermination by bacteriophage lambda Q protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

An inactive open complex mediated by an UP element at Escherichia coli promoters

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

A new family of amino-acid-efflux proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Bacterial solute uptake and efflux systems

12 July 2018

1 reference

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A surface of Escherichia coli sigma 70 required for promoter function and antitermination by phage lambda Q protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Transcription activation or repression by phage psi 29 protein p4 depends on the strength of the RNA polymerase-promoter interactions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

A common role of CRP in transcription activation: CRP acts transiently to stimulate events leading to open complex formation at a diverse set of promoters

12 July 2018

1 reference

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The binding of two dimers of IciA protein to the dnaA promoter 1P element enhances the binding of RNA polymerase to the dnaA promoter 1P.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

An Escherichia coli host strain useful for efficient overproduction of cloned gene products with NaCl as the inducer

12 July 2018

1 reference

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Physical interference between escherichia coli RNA polymerase molecules transcribing in tandem enhances abortive synthesis and misincorporation.

12 July 2018

1 reference

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Transcriptional activation by recruitment

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

A new type of transporter with a new type of cellular function: L-lysine export from Corynebacterium glutamicum

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Dual regulation of open-complex formation and promoter clearance by Arc explains a novel repressor to activator switch

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Effects of H-NS and potassium glutamate on sigmaS- and sigma70-directed transcription in vitro from osmotically regulated P1 and P2 promoters of proU in Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Interaction of the IciA protein with AT-rich regions in plasmid replication origins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Molecular biology of the LysR family of transcriptional regulators

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Stalling of Escherichia coli RNA polymerase in the +6 to +12 region in vivo is associated with tight binding to consensus promoter elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Repression and activation of transcription by Gal and Lac repressors: involvement of alpha subunit of RNA polymerase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Lac repressor is a transient gene-activating protein.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

A novel protein binds a key origin sequence to block replication of an E. coli minichromosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

iciA, an Escherichia coli gene encoding a specific inhibitor of chromosomal initiation of replication in vitro

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Mutational analysis of repression and activation of the tyrP gene in Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

IciA protein, a specific inhibitor of initiation of Escherichia coli chromosomal replication

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Opposed actions of regulatory proteins, DnaA and IciA, in opening the replication origin of Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting.

12 July 2018

1 reference

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lacP1 promoter with an extended -10 motif. Pleiotropic effects of cyclic AMP protein at different steps of transcription initiation.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

The sigma 70 subunit of RNA polymerase induces lacUV5 promoter-proximal pausing of transcription

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Osmo-regulation of bacterial transcription via poised RNA polymerase

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Expression control and specificity of the basic amino acid exporter LysE of Corynebacterium glutamicum

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Occlusion of RNA polymerase by oligomerization of DnaA protein over the dnaA promoter of Escherichia coli.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Transcriptional activation of the dnaA gene encoding the initiator for oriC replication by IciA protein, an inhibitor of in vitro oriC replication in Escherichia coli.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

A branched pathway in the early stage of transcription by Escherichia coli RNA polymerase.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1865496

Effect of IciA protein on the expression of the nrd gene encoding ribonucleoside diphosphate reductase in E. coli

25 September 2018

1 reference

12 December 2020

Region 3.2 of the sigma subunit contributes to the binding of the 3'-initiating nucleotide in the RNA polymerase active center and facilitates promoter clearance during initiation

1 reference

12 December 2020

Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity

1 reference

12 December 2020

Repression and activation of arginine transport genes in Escherichia coli K 12 by the ArgP protein

1 reference

12 December 2020

Identifiers

DOI

10.1101/GAD.1520507

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17504942%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17504942%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

PubMed publication ID

17504942

1 reference