Quantitative isoform-profiling of highly diversified recognition molecules. (Q35810058)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25985086%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

title

Quantitative isoform-profiling of highly diversified recognition molecules (English)

1 reference

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8 March 2020

author name string

Dietmar Schreiner

series ordinal

1

1 reference

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8 March 2020

Jovan Simicevic

series ordinal

2

1 reference

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8 March 2020

Erik Ahrné

series ordinal

3

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8 March 2020

language of work or name

English

0 references

publication date

18 May 2015

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8 March 2020

1 reference

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8 March 2020

volume

4

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8 March 2020

page(s)

e07794

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DeCoN: genome-wide analysis of in vivo transcriptional dynamics during pyramidal neuron fate selection in neocortex

8 March 2020

cites work

1 reference

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Evaluation of data-dependent and -independent mass spectrometric workflows for sensitive quantification of proteins and phosphorylation sites

11 July 2018

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Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins

11 July 2018

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Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics

11 July 2018

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Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing

11 July 2018

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Polymorphic receptors: neuronal functions and molecular mechanisms of diversification.

11 July 2018

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Neuronal cell type-specific alternative splicing is regulated by the KH domain protein SLM1.

11 July 2018

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Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach

11 July 2018

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Expanding proteome coverage with orthogonal-specificity α-lytic proteases

11 July 2018

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Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins

11 July 2018

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11 July 2018

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Protein tyrosine phosphatases PTPδ, PTPσ, and LAR: presynaptic hubs for synapse organization

11 July 2018

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Presynaptic neurexin-3 alternative splicing trans-synaptically controls postsynaptic AMPA receptor trafficking

11 July 2018

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Recent advances in quantitative neuroproteomics

11 July 2018

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A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

11 July 2018

1 reference

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Activity-dependent neuronal signalling and autism spectrum disorder

11 July 2018

1 reference

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Higher-order architecture of cell adhesion mediated by polymorphic synaptic adhesion molecules neurexin and neuroligin

11 July 2018

1 reference

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Differences in AMPA and kainate receptor interactomes facilitate identification of AMPA receptor auxiliary subunit GSG1L

11 July 2018

1 reference

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Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions

11 July 2018

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Identification of CSPα clients reveals a role in dynamin 1 regulation.

11 July 2018

1 reference

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Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Regulation of terminal differentiation programs in the nervous system.

11 July 2018

1 reference

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The Crystal Structure of the α-Neurexin-1 Extracellular Region Reveals a Hinge Point for Mediating Synaptic Adhesion and Function

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

The structure of neurexin 1α reveals features promoting a role as synaptic organizer

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Global quantification of mammalian gene expression control

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

The role of neurexins in schizophrenia and autistic spectrum disorder.

11 July 2018

1 reference

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Less label, more free: approaches in label-free quantitative mass spectrometry.

11 July 2018

1 reference

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Chemoaffinity Revisited: Dscams, Protocadherins, and Neural Circuit Assembly

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Combinatorial homophilic interaction between gamma-protocadherin multimers greatly expands the molecular diversity of cell adhesion

11 July 2018

1 reference

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Splice Form Dependence of β-Neurexin/Neuroligin Binding Interactions

11 July 2018

1 reference

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Trans-synaptic interaction of GluRdelta2 and Neurexin through Cbln1 mediates synapse formation in the cerebellum

11 July 2018

1 reference

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LRRTMs and neuroligins bind neurexins with a differential code to cooperate in glutamate synapse development

11 July 2018

1 reference

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SnapShot: Neuroligin-neurexin complexes

11 July 2018

1 reference

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LRRTM2 interacts with Neurexin1 and regulates excitatory synapse formation

11 July 2018

1 reference

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Neuroproteomics: understanding the molecular organization and complexity of the brain

11 July 2018

1 reference

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Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma

11 July 2018

1 reference

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Neuroligin-3 is a neuronal adhesion protein at GABAergic and glutamatergic synapses

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Silencing of neuroligin function by postsynaptic neurexins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Molecular anatomy of a trafficking organelle

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

A splice code for trans-synaptic cell adhesion mediated by binding of neuroligin 1 to alpha- and beta-neurexins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Interpretation of shotgun proteomic data: the protein inference problem

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Neurexins induce differentiation of GABA and glutamate postsynaptic specializations via neuroligins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Alpha-neurexins couple Ca2+ channels to synaptic vesicle exocytosis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Neurexin mediates the assembly of presynaptic terminals

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

A stoichiometric complex of neurexins and dystroglycan in brain

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Neuroligin 1: a splice site-specific ligand for beta-neurexins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Targeted combinatorial alternative splicing generates brain region-specific repertoires of neurexins.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Regional diversity and developmental dynamics of the AMPA-receptor proteome in the mammalian brain.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Cell-specific alternative splicing of Drosophila Dscam2 is crucial for proper neuronal wiring.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Cell-intrinsic requirement of Dscam1 isoform diversity for axon collateral formation.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

The diversity of protein turnover and abundance under nitrogen-limited steady-state conditions in Saccharomyces cerevisiae

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Protein quantification by isotope dilution mass spectrometry of proteolytic fragments: cleavage rate and accuracy.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Alternative splicing controls selective trans-synaptic interactions of the neuroligin-neurexin complex.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489214

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.07794

Isotope-labeled Protein Standards

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.07794

21 January 2018

Identifiers

DOI

10.7554/ELIFE.07794

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25985086%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25985086%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

PubMed publication ID

25985086

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25985086%20AND%20SRC:MED&resulttype=core&format=json