Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies (Q35851901)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26604270%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

title

Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies (English)

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1 March 2020

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9

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1 March 2020

Kristin S Inman

6

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Amnon Amir

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1 March 2020

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Emily Vogtmann

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1 March 2020

author name string

Rashmi Sinha

1

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1 March 2020

Jun Chen

2

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1 March 2020

Jianxin Shi

5

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1 March 2020

Roberto Flores

7

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1 March 2020

Joshua Sampson

8

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1 March 2020

Nicholas Chia

10

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1 March 2020

publication date

24 November 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26604270%20AND%20SRC:MED&resulttype=core&format=json

Cancer Epidemiology, Biomarkers & Prevention

1 March 2020

published in

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1 March 2020

volume

25

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1 March 2020

page(s)

407-416

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1 March 2020

issue

2

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Linear growth faltering in infants is associated with Acidaminococcus sp. and community-level changes in the gut microbiota

1 March 2020

cites work

1 reference

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Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

11 July 2018

1 reference

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Nationwide bowel cancer screening programme in England: cohort study of lifestyle factors affecting participation and outcomes in women

11 July 2018

1 reference

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Childhood obesity is associated to the interaction between firmicutes and high energy food consumption

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Potential of fecal microbiota for early-stage detection of colorectal cancer

11 July 2018

1 reference

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Influence of DNA extraction method, 16S rRNA targeted hypervariable regions, and sample origin on microbial diversity detected by 454 pyrosequencing in marine chemosynthetic ecosystems.

11 July 2018

1 reference

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Comparison of methods for fecal microbiome biospecimen collection

11 July 2018

1 reference

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The impact of different DNA extraction kits and laboratories upon the assessment of human gut microbiota composition by 16S rRNA gene sequencing

11 July 2018

1 reference

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Human gut microbiome and risk for colorectal cancer

11 July 2018

1 reference

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Investigating the impact of storage conditions on microbial community composition in soil samples

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Fecal Microbiome and Volatile Organic Compound Metabolome in Obese Humans With Nonalcoholic Fatty Liver Disease

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Fusobacterium is associated with colorectal adenomas

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Disruption of the human gut microbiota following Norovirus infection

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

The impact of population-based faecal occult blood test screening on colorectal cancer mortality: a matched cohort study

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Associating microbiome composition with environmental covariates using generalized UniFrac distances

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Comparison of storage conditions for human vaginal microbiome studies

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

On the suitability of short reads of 16S rRNA for phylogeny-based analyses in environmental surveys

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

QIIME allows analysis of high-throughput community sequencing data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Prevalence, incidence, and risk factors of intestinal parasites in Danish primary care patients with irritable bowel syndrome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Short pyrosequencing reads suffice for accurate microbial community analysis

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Noncryogenic preservation of mammalian tissues for DNA extraction: an assessment of storage methods

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4821594

Faecal occult-blood screening in Burgundy

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26604270

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1158/1055-9965.EPI-15-0951

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26604270%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26604270%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference