Dependency of ISW1a chromatin remodeling on extranucleosomal DNA. (Q35856797)

10 August 2017

Dependency of ISW1a chromatin remodeling on extranucleosomal DNA. (English)

1 reference

10 August 2017

Vamsi K Gangaraju

1

1 reference

PMCID

1899934

10 August 2017

Blaine Bartholomew

series ordinal

2

1 reference

PMCID

1899934

10 August 2017

language of work or name

English

0 references

publication date

5 February 2007

1 reference

Molecular and Cellular Biology

10 August 2017

1 reference

10 August 2017

27

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10 August 2017

8

1 reference

10 August 2017

3217-3225

1 reference

Regulation of ISW2 by concerted action of histone H4 tail and extranucleosomal DNA.

10 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Antagonistic forces that position nucleosomes in vivo.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

In and out: histone variant exchange in chromatin

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Transcription-induced chromatin remodeling at the c-myc gene involves the local exchange of histone H2A.Z.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Functional role of extranucleosomal DNA and the entry site of the nucleosome in chromatin remodeling by ISW2.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

ATP-dependent nucleosome remodelling: factors and functions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

SWRred not shaken; mixing the histones

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

The SANT domain: a unique histone-tail-binding module?

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Histone fold protein Dls1p is required for Isw2-dependent chromatin remodeling in vivo

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Chromatin targeting of de novo DNA methyltransferases by the PWWP domain

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Histone H2A/H2B dimer exchange by ATP-dependent chromatin remodeling activities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Chromatin remodeling by ATP-dependent molecular machines.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Evidence for DNA translocation by the ISWI chromatin-remodeling enzyme

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Yeast Isw1p forms two separable complexes in vivo

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

High-resolution mapping of changes in histone-DNA contacts of nucleosomes remodeled by ISW2

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

The PWWP domain of mammalian DNA methyltransferase Dnmt3b defines a new family of DNA-binding folds

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Critical role for the histone H4 N terminus in nucleosome remodeling by ISWI.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

The language of covalent histone modifications

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Use of DNA photoaffinity labeling to study nucleosome remodeling by SWI/SNF.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in the ATP-dependent catalysis of chromatin assembly

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

NURD, a novel complex with both ATP-dependent chromatin-remodeling and histone deacetylase activities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Requirement of RSF and FACT for transcription of chromatin templates in vitro

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Hydroxyl radical footprinting: a high-resolution method for mapping protein-DNA contacts

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Nucleosome assembly protein 1 exchanges histone H2A-H2B dimers and assists nucleosome sliding.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Site-directed histone-DNA contact mapping for analysis of nucleosome dynamics

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Assembly of yeast chromatin using ISWI complexes.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Isw1 chromatin remodeling ATPase coordinates transcription elongation and termination by RNA polymerase II.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

Purification and properties of an ATP-dependent nucleosome remodeling factor.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899934

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17283061

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Global role for chromatin remodeling enzymes in mitotic gene expression

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17283061

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/MCB.01731-06

1 reference

10 August 2017

1 reference

10 August 2017

1 reference

PMCID

1899934