Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development (Q35863369)

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scientific article published on 16 June 2015

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English	Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development	scientific article published on 16 June 2015

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scholarly article

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17 February 2020

Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development (English)

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17 February 2020

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Erratum to: Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development.

1 reference

10.1186/S13059-016-1123-9

12 July 2019

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Nathan J. Palpant

3

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17 February 2020

Louise C Laurent

9

object named as

Louise C Laurent

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17 February 2020

author name string

Linda Szabo

1

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17 February 2020

Robert Morey

2

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17 February 2020

Peter L Wang

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17 February 2020

Nastaran Afari

5

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17 February 2020

Chuan Jiang

6

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17 February 2020

Mana M Parast

7

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17 February 2020

Charles E Murry

8

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17 February 2020

Julia Salzman

10

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17 February 2020

publication date

16 June 2015

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17 February 2020

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17 February 2020

16

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17 February 2020

126

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17 February 2020

https://scigraph.springernature.com/pub.10.1186/s13059-015-0690-5

0 references

CIRI: an efficient and unbiased algorithm for de novo circular RNA identification.

1 reference

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11 July 2018

Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Short intronic repeat sequences facilitate circular RNA production

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Complementary sequence-mediated exon circularization

1 reference

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11 July 2018

Expanded identification and characterization of mammalian circular RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?

1 reference

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11 July 2018

IVT-seq reveals extreme bias in RNA sequencing

1 reference

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11 July 2018

Biochemical defects in minor spliceosome function in the developmental disorder MOPD I.

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11 July 2018

Detecting and characterizing circular RNAs

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11 July 2018

Human embryonic-stem-cell-derived cardiomyocytes regenerate non-human primate hearts.

1 reference

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11 July 2018

Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Circular RNA is expressed across the eukaryotic tree of life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Minor class splicing shapes the zebrafish transcriptome during development

1 reference

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11 July 2018

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Consistent errors in first strand cDNA due to random hexamer mispriming

1 reference

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11 July 2018

Cell-type specific features of circular RNA expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Transmembrane protein 88: a Wnt regulatory protein that specifies cardiomyocyte development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Circular RNAs are a large class of animal RNAs with regulatory potency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Natural RNA circles function as efficient microRNA sponges

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Circular RNAs are abundant, conserved, and associated with ALU repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Streaming fragment assignment for real-time analysis of sequencing experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

The significant other: splicing by the minor spliceosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Targeted genomic integration of a selectable floxed dual fluorescence reporter in human embryonic stem cells

1 reference

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11 July 2018

Robust cardiomyocyte differentiation from human pluripotent stem cells via temporal modulation of canonical Wnt signaling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Alternative splicing of RNA triplets is often regulated and accelerates proteome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain

1 reference

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11 July 2018

Fbxw7-dependent degradation of Notch is required for control of "stemness" and neuronal-glial differentiation in neural stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Widespread establishment and regulatory impact of Alu exons in human genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Myocardial function with reduced expression of the sodium-calcium exchanger

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Endogenous Wnt/beta-catenin signaling is required for cardiac differentiation in human embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

Inactivation of hnRNP K by expanded intronic AUUCU repeat induces apoptosis via translocation of PKCdelta to mitochondria in spinocerebellar ataxia 10

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11 July 2018

MicroRNAs coordinate an alternative splicing network during mouse postnatal heart development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4506483

11 July 2018

The F-box protein Cdc4/Fbxw7 is a novel regulator of neural crest development in Xenopus laevis

1 reference

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11 July 2018

A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart

1 reference

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11 July 2018

Cardiomyocytes derived from human embryonic stem cells in pro-survival factors enhance function of infarcted rat hearts

1 reference

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11 July 2018

The divergent U12-type spliceosome is required for pre-mRNA splicing and is essential for development in Drosophila

1 reference

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11 July 2018

A circularized sodium-calcium exchanger exon 2 transcript

1 reference

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11 July 2018

Circular transcripts of the testis-determining gene Sry in adult mouse testis

1 reference

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11 July 2018

Exon circularization requires canonical splice signals.

1 reference

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24 September 2018

circRNA biogenesis competes with pre-mRNA splicing.

1 reference

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24 September 2018

The Na+ -Ca2+ exchanger is essential for embryonic heart development in mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/26076956

12 December 2020

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10.1186/S13059-015-0690-5

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17 February 2020

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17 February 2020

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17 February 2020

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