Structural insights into the assembly of the histone deacetylase-associated Sin3L/Rpd3L corepressor complex (Q35865669)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26124119%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

title

Structural insights into the assembly of the histone deacetylase-associated Sin3L/Rpd3L corepressor complex (English)

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18 February 2020

2

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18 February 2020

Ishwar Radhakrishnan

11

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18 February 2020

author name string

Michael D Clark

1

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18 February 2020

Richard Graveline

3

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18 February 2020

Clarence W Chan

4

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18 February 2020

Tao Xie

5

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18 February 2020

Zhonglei Chen

6

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18 February 2020

Yujia Ding

7

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18 February 2020

Yongbo Zhang

8

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18 February 2020

Alfonso Mondragón

9

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18 February 2020

Gregory David

10

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18 February 2020

language of work or name

English

0 references

publication date

29 June 2015

1 reference

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Proceedings of the National Academy of Sciences of the United States of America

18 February 2020

published in

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18 February 2020

volume

112

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18 February 2020

issue

28

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18 February 2020

page(s)

E3669-78

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Physical and functional interactions between the histone H3K4 demethylase KDM5A and the nucleosome remodeling and deacetylase (NuRD) complex

18 February 2020

cites work

1 reference

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Transcription and beyond: the role of mammalian class I lysine deacetylases

11 July 2018

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How good are my data and what is the resolution?

11 July 2018

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Class I HDACs Share a Common Mechanism of Regulation by Inositol Phosphates

11 July 2018

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BRMS151-98 and BRMS151-84 are crystal oligomeric coiled coils with different oligomerization states, which behave as disordered protein fragments in solution

11 July 2018

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Mechanism of CREB recognition and coactivation by the CREB-regulated transcriptional coactivator CRTC2

11 July 2018

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Human family with sequence similarity 60 member A (FAM60A) protein: a new subunit of the Sin3 deacetylase complex

11 July 2018

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HELANAL-Plus: a web server for analysis of helix geometry in protein structures.

11 July 2018

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Structure of HDAC3 bound to co-repressor and inositol tetraphosphate

11 July 2018

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Structural biology of human metal-dependent histone deacetylases

11 July 2018

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Unraveling the enigmatic complexities of BRMS1-mediated metastasis suppression

11 July 2018

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The structure of BRMS1 nuclear export signal and SNX6 interacting region reveals a hexamer formed by antiparallel coiled coils

11 July 2018

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Overview of the CCP4 suite and current developments

11 July 2018

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Physiological roles of class I HDAC complex and histone demethylase.

11 July 2018

1 reference

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A novel mammalian complex containing Sin3B mitigates histone acetylation and RNA polymerase II progression within transcribed loci

11 July 2018

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11 July 2018

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MolProbity: all-atom structure validation for macromolecular crystallography

11 July 2018

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TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

11 July 2018

1 reference

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Sin3: master scaffold and transcriptional corepressor

11 July 2018

1 reference

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Over-expression of the BRMS1 family member SUDS3 does not suppress metastasis of human cancer cells

11 July 2018

1 reference

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Eloquent silence: developmental functions of Class I histone deacetylases

11 July 2018

1 reference

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Keeping things quiet: roles of NuRD and Sin3 co-repressor complexes during mammalian development

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men

11 July 2018

1 reference

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Alterations of BRMS1-ARID4A interaction modify gene expression but still suppress metastasis in human breast cancer cells

11 July 2018

1 reference

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Automated structure solution with autoSHARP

11 July 2018

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The Buccaneer software for automated model building. 1. Tracing protein chains

11 July 2018

1 reference

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A feed-forward repression mechanism anchors the Sin3/histone deacetylase and N-CoR/SMRT corepressors on chromatin

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation

11 July 2018

1 reference

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Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex

11 July 2018

1 reference

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Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

11 July 2018

1 reference

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mSin3A corepressor regulates diverse transcriptional networks governing normal and neoplastic growth and survival

11 July 2018

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Coot: model-building tools for molecular graphics

11 July 2018

1 reference

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Sin3: a flexible regulator of global gene expression and genome stability.

11 July 2018

1 reference

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Identification of a novel BRMS1-homologue protein p40 as a component of the mSin3A/p33(ING1b)/HDAC1 deacetylase complex

11 July 2018

1 reference

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MONSTER: inferring non-covalent interactions in macromolecular structures from atomic coordinate data

11 July 2018

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Macromolecular TLS refinement in REFMAC at moderate resolutions

11 July 2018

1 reference

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Breast cancer metastasis suppressor 1 (BRMS1) forms complexes with retinoblastoma-binding protein 1 (RBP1) and the mSin3 histone deacetylase complex and represses transcription

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

mSin3-associated protein, mSds3, is essential for pericentric heterochromatin formation and chromosome segregation in mammalian cells

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Identification and characterization of three new components of the mSin3A corepressor complex

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

ARIA: automated NOE assignment and NMR structure calculation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage site

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Identification of mammalian Sds3 as an integral component of the Sin3/histone deacetylase corepressor complex

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Socket: a program for identifying and analysing coiled-coil motifs within protein structures.

11 July 2018

1 reference

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NMR spectroscopy: a multifaceted approach to macromolecular structure

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Sds3 (suppressor of defective silencing 3) is an integral component of the yeast Sin3[middle dot]Rpd3 histone deacetylase complex and is required for histone deacetylase activity.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Functional analysis of the SIN3-histone deacetylase RPD3-RbAp48-histone H4 connection in the Xenopus oocyte

11 July 2018

1 reference

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

11 July 2018

1 reference

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Targeted recruitment of the Sin3-Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

SAP30, a novel protein conserved between human and yeast, is a component of a histone deacetylase complex

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Histone deacetylase associated with mSin3A mediates repression by the acute promyelocytic leukemia-associated PLZF protein

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Histone deacetylases associated with the mSin3 corepressor mediate mad transcriptional repression

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Improved R-factors for diffraction data analysis in macromolecular crystallography

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

11 July 2018

1 reference

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Calculation of protein extinction coefficients from amino acid sequence data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Heteronuclear filters in two-dimensional [1H,1H]-NMR spectroscopy: combined use with isotope labelling for studies of macromolecular conformation and intermolecular interactions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

The mSin3A chromatin-modifying complex is essential for embryogenesis and T-cell development

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Correction of spin diffusion during iterative automated NOE assignment

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507224

Combined Action of PHD and Chromo Domains Directs the Rpd3S HDAC to Transcribed Chromatin

24 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1504021112

Distinct roles of HDAC complexes in promoter silencing, antisense suppression and DNA damage protection

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26124119

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1504021112

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26124119%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26124119%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

PubMed publication ID

26124119

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26124119%20AND%20SRC:MED&resulttype=core&format=json