Comprehensive evaluation of AmpliSeq transcriptome, a novel targeted whole transcriptome RNA sequencing methodology for global gene expression analysis. (Q35870237)

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scientific article published on 16 December 2015

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English	Comprehensive evaluation of AmpliSeq transcriptome, a novel targeted whole transcriptome RNA sequencing methodology for global gene expression analysis.	scientific article published on 16 December 2015

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2 March 2020

Comprehensive evaluation of AmpliSeq transcriptome, a novel targeted whole transcriptome RNA sequencing methodology for global gene expression analysis (English)

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2 March 2020

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Amy Turner

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2 March 2020

Praful Aggarwal

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2 March 2020

Andrea Matter

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Erin Storvick

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2 March 2020

Ulrich Broeckel

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16 December 2015

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2 March 2020

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2 March 2020

16

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2 March 2020

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DESeq2

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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scikit-learn

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

limma powers differential expression analyses for RNA-sequencing and microarray studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681149

27 July 2018

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

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27 July 2018

HTSeq--a Python framework to work with high-throughput sequencing data

1 reference

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RNA expression profiling of human iPSC-derived cardiomyocytes in a cardiac hypertrophy model

1 reference

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27 July 2018

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

1 reference

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27 July 2018

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

1 reference

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27 July 2018

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study.

1 reference

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27 July 2018

Highly sensitive amplicon-based transcript quantification by semiconductor sequencing

1 reference

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27 July 2018

Differential meta-analysis of RNA-seq data from multiple studies

1 reference

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27 July 2018

Targeted RNA-sequencing with competitive multiplex-PCR amplicon libraries

1 reference

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27 July 2018

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

1 reference

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27 July 2018

Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681149

27 July 2018

Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations

1 reference

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27 July 2018

Progress in ion torrent semiconductor chip based sequencing

1 reference

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27 July 2018

Comparison of next-generation sequencing systems

1 reference

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27 July 2018

Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly

1 reference

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27 July 2018

Fast gapped-read alignment with Bowtie 2

1 reference

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27 July 2018

High purity human-induced pluripotent stem cell-derived cardiomyocytes: electrophysiological properties of action potentials and ionic currents.

1 reference

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27 July 2018

From RNA-seq reads to differential expression results

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681149

27 July 2018

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681149

27 July 2018

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

1 reference

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27 July 2018

Fast and accurate long-read alignment with Burrows-Wheeler transform

1 reference

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27 July 2018

RNA-Seq gene expression estimation with read mapping uncertainty

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681149

27 July 2018

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681149

27 July 2018

Human induced pluripotent stem cells free of vector and transgene sequences

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681149

27 July 2018

RNA-Seq: a revolutionary tool for transcriptomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681149

27 July 2018

Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681149

27 July 2018

MAQC papers over the cracks.

1 reference

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27 July 2018

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681149

27 July 2018

Using RNA sample titrations to assess microarray platform performance and normalization techniques

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681149

27 July 2018

Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4681149

27 July 2018

A high-resolution map of transcription in the yeast genome

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27 July 2018

Empirical analysis of transcriptional activity in the Arabidopsis genome

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Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays

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SSAHA: a fast search method for large DNA databases

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27 July 2018

Identification of common molecular subsequences

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27 July 2018

Transcriptomic profiling of rat liver samples in a comprehensive study design by RNA-Seq

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24 September 2018

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

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24 September 2018

Evaluation of DNA microarray results with quantitative gene expression platforms

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24 September 2018

The External RNA Controls Consortium: a progress report.

1 reference

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24 September 2018

Global identification of human transcribed sequences with genome tiling arrays

1 reference

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Multi-center genetic study of hypertension: The Family Blood Pressure Program (FBPP).

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24 September 2018

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10.1186/S12864-015-2270-1

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2 March 2020

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2 March 2020

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