Lineage-specific expansion of KRAB zinc-finger transcription factor genes: implications for the evolution of vertebrate regulatory networks (Q35875136)

10 August 2017

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title

Lineage-specific expansion of KRAB zinc-finger transcription factor genes: implications for the evolution of vertebrate regulatory networks (English)

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10 August 2017

Hamilton AT

1

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10 August 2017

Huntley S

2

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10 August 2017

Kim J

3

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10 August 2017

Branscomb E

4

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10 August 2017

Stubbs L

5

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10 August 2017

language of work or name

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1 January 2003

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Cold Spring Harbor Symposia on Quantitative Biology

10 August 2017

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10 August 2017

68

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10 August 2017

131-140

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Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

10 August 2017

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

The zinc finger transcription factor, MOK2, negatively modulates expression of the interphotoreceptor retinoid-binding protein gene, IRBP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Gene number, noise reduction and biological complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Homeotic genes and the evolution of arthropods and chordates

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

NRSF/REST is required in vivo for repression of multiple neuronal target genes during embryogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

All in the family: the BTB/POZ, KRAB, and SCAN domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

The biology of the mammalian Krüppel-like family of transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

The p120(ctn)-binding partner Kaiso is a bi-modal DNA-binding protein that recognizes both a sequence-specific consensus and methylated CpG dinucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

The temporal distribution of gene duplication events in a set of highly conserved human gene families

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Human specific loss of olfactory receptor genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Identification of a novel Krüppel-associated box domain protein, Krim-1, that interacts with c-Myc and inhibits its oncogenic activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

The killer cell immunoglobulin-like receptor (KIR) genomic region: gene-order, haplotypes and allelic polymorphism.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Synergy between adjacent zinc fingers in sequence-specific DNA recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Regulator of sex-limitation (Rsl) encodes a pair of KRAB zinc-finger genes that control sexually dimorphic liver gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Structural classification of zinc fingers: survey and summary

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Multifunctional zinc finger proteins in development and disease

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Initial sequencing and analysis of the human genome

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

The role of lineage-specific gene family expansion in the evolution of eukaryotes

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

The evolutionary fate and consequences of duplicate genes

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Divergence in the spatial pattern of gene expression between human duplicate genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Comparative analysis of KRAB zinc finger proteins in rodents and man: evidence for several evolutionarily distinct subfamilies of KRAB zinc finger genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

A novel zinc finger transcriptional repressor, ZNF224, interacts with the negative regulatory element (AldA-NRE) and inhibits gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Seven-transmembrane proteins as odorant and chemosensory receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Evolution by the birth-and-death process in multigene families of the vertebrate immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Analysis of the consensus binding sequence and the DNA-binding domain of ZF5

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Cloning and characterization of ZNF189, a novel human Krüppel-like zinc finger gene localized to chromosome 9q22-q31

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

CTCF is a uniquely versatile transcription regulator linked to epigenetics and disease

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Design and selection of novel Cys2His2 zinc finger proteins

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Differential effect of zinc finger deletions on the binding of CTCF to the promoter of the amyloid precursor protein gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Analysis of homologous XRCC1-linked zinc-finger gene families in human and mouse: evidence for orthologous genes

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Molecular cloning and characterization of a KRAB-containing zinc finger protein, ZNF317, and its isoforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

A Krüppel-associated box-zinc finger protein, NT2, represses cell-type-specific promoter activity of the alpha 2(XI) collagen gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

The genomic context of natural killer receptor extended gene families

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Mammalian Krüppel-like transcription factors: more than just a pretty finger

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

The human and murine protocadherin-beta one-exon gene families show high evolutionary conservation, despite the difference in gene number

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

A broad role for the zinc finger protein ZNF202 in human lipid metabolism

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Teashirt is required for transcriptional repression mediated by high Wingless levels.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Initial sequencing and comparative analysis of the mouse genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

The diversity and evolutionary relationships of the pregnancy-associated glycoproteins, an aspartic proteinase subfamily consisting of many trophoblast-expressed genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Gene expression profiling leads to identification of GLI1-binding elements in target genes and a role for multiple downstream pathways in GLI1-induced cell transformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

The sense of smell: genomics of vertebrate odorant receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

Sequence-specific transcriptional corepressor function for BRCA1 through a novel zinc finger protein, ZBRK1

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

DNA-induced α-helix capping in conserved linker sequences is a determinant of binding affinity in Cys2-His2 zinc fingers

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.131

21 January 2018

Identifiers

DOI

10.1101/SQB.2003.68.131

1 reference

10 August 2017

1 reference