Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production (Q35878786)

10 August 2017

Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production (English)

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10 August 2017

9

Nevan J Krogan

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10 August 2017

Souad Naji

1

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10 August 2017

Géza Ambrus

2

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10 August 2017

Peter Cimermančič

3

1 reference

10 August 2017

Jason R Reyes

4

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10 August 2017

Jeffrey R Johnson

5

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10 August 2017

Rebecca Filbrandt

6

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10 August 2017

Michael D Huber

7

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10 August 2017

Paul Vesely

8

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10 August 2017

John R Yates

10

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10 August 2017

Andrew C Saphire

11

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10 August 2017

Larry Gerace

12

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10 August 2017

15 December 2011

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Molecular & Cellular Proteomics

10 August 2017

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10 August 2017

11

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10 August 2017

4

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10 August 2017

M111.015313

1 reference

describes a project that uses

10 August 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

cites work

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Host factors involved in retroviral budding and release.

11 July 2018

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Insights into cellular factors that regulate HIV-1 replication in human cells

11 July 2018

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Recognition of nuclear targeting signals by Karyopherin-β proteins

11 July 2018

1 reference

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RNA helicases at work: binding and rearranging

11 July 2018

1 reference

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Identification of a small molecule inhibitor of importin β mediated nuclear import by confocal on-bead screening of tagged one-bead one-compound libraries.

11 July 2018

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RNA helicase A modulates translation of HIV-1 and infectivity of progeny virions

11 July 2018

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P68 RNA helicase is a nucleocytoplasmic shuttling protein

11 July 2018

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Matrix mediates the functional link between human immunodeficiency virus type 1 RNA nuclear export elements and the assembly competency of Gag in murine cells.

11 July 2018

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mRNA nuclear export at a glance

11 July 2018

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A genome-wide short hairpin RNA screening of jurkat T-cells for human proteins contributing to productive HIV-1 replication

11 July 2018

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11 July 2018

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11 July 2018

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Reconstitution of nuclear import in permeabilized cells

11 July 2018

1 reference

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A solution to limited genomic capacity: using adaptable binding surfaces to assemble the functional HIV Rev oligomer on RNA

11 July 2018

1 reference

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Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication

11 July 2018

1 reference

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Protein structure and oligomerization are important for the formation of export-competent HIV-1 Rev-RRE complexes.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Identification of host proteins required for HIV infection through a functional genomic screen

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

c-Jun supports ribosomal RNA processing and nucleolar localization of RNA helicase DDX21.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Integration of biological networks and gene expression data using Cytoscape

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

The long unwinding road of RNA helicases

11 July 2018

1 reference

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Structural biology of nucleocytoplasmic transport

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Rev proteins of human and simian immunodeficiency virus enhance RNA encapsidation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Detecting differential and correlated protein expression in label-free shotgun proteomics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Proteomic and biochemical analysis of purified human immunodeficiency virus type 1 produced from infected monocyte-derived macrophages

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

DExD/H box RNA helicases: multifunctional proteins with important roles in transcriptional regulation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Alterations in the expression of DEAD-box and other RNA binding proteins during HIV-1 replication

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

A DEAD box protein facilitates HIV-1 replication as a cellular co-factor of Rev.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Requirement of DDX3 DEAD box RNA helicase for HIV-1 Rev-RRE export function

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

11 July 2018

1 reference

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A model for random sampling and estimation of relative protein abundance in shotgun proteomics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

HIV-1 and the host cell: an intimate association

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Nuclear mRNA export: insights from virology

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Rev binds specifically to a purine loop in the SL1 region of the HIV-1 leader RNA

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

11 July 2018

1 reference

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11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

A new RNA element located in the coding region of a murine endogenous retrovirus can functionally replace the Rev/Rev-responsive element system in human immunodeficiency virus type 1 Gag expression

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

The carboxyl terminus of RNA helicase A contains a bidirectional nuclear transport domain

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

11 July 2018

THE HIV-1 REV PROTEIN

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

The arginine-rich domains present in human immunodeficiency virus type 1 Tat and Rev function as direct importin beta-dependent nuclear localization signals

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

HIV-1: fifteen proteins and an RNA

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Site-specific phosphorylation of the human immunodeficiency virus type-1 Rev protein accelerates formation of an efficient RNA-binding conformation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

HIV-1 infection of nondividing cells through the recognition of integrase by the importin/karyopherin pathway

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Translation initiation of ornithine decarboxylase and nucleocytoplasmic transport of cyclin D1 mRNA are increased in cells overexpressing eukaryotic initiation factor 4E.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

A molecular rheostat. Co-operative rev binding to stem I of the rev-response element modulates human immunodeficiency virus type-1 late gene expression

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

The Rev protein of human immunodeficiency virus type 1 promotes polysomal association and translation of gag/pol and vpu/env mRNAs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

Rev regulates translation of human immunodeficiency virus type 1 RNAs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

The requirement of the DEAD-box protein DDX24 for the packaging of human immunodeficiency virus type 1 RNA.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322577

24 September 2018

Gle1 does double duty

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22174317

12 December 2020

inferred from PubMed ID database lookup

Genome-scale RNAi screen for host factors required for HIV replication

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22174317

12 December 2020

inferred from PubMed ID database lookup

Regulation of HIV-1 env mRNA translation by Rev protein

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22174317

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1074/MCP.M111.015313

1 reference

10 August 2017

1 reference

10 August 2017

PubMed publication ID

22174317

1 reference