A GeneTrek analysis of the maize genome (Q35880341)

10 August 2017

A GeneTrek analysis of the maize genome (English)

1 reference

10 August 2017

2

Clémentine Vitte

1 reference

10 August 2017

7

Jeffrey L Bennetzen

1 reference

10 August 2017

Renyi Liu

1

1 reference

10 August 2017

Jianxin Ma

3

1 reference

10 August 2017

A Assibi Mahama

4

1 reference

10 August 2017

Thanda Dhliwayo

5

1 reference

10 August 2017

Michael Lee

6

1 reference

10 August 2017

language of work or name

English

0 references

publication date

5 July 2007

1 reference

Proceedings of the National Academy of Sciences of the United States of America

10 August 2017

1 reference

10 August 2017

104

1 reference

10 August 2017

28

1 reference

10 August 2017

11844-11849

1 reference

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

10 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Highly repeated DNA sequence limited to knob heterochromatin in maize

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Predicting chromosomal locations of genetically mapped loci in maize using the Morgan2McClintock Translator

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Structure and architecture of the maize genome.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Origins, genetic organization and transcription of a family of non-autonomous helitron elements in maize

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Gene movement by Helitron transposons contributes to the haplotype variability of maize

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Evolution of DNA sequence nonhomologies among maize inbreds

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Consistent over-estimation of gene number in complex plant genomes.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Gene loss and movement in the maize genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Close split of sorghum and maize genome progenitors

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Sequence composition and genome organization of maize.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Plant neocentromeres: fast, focused, and driven

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Rapid recent growth and divergence of rice nuclear genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Genomic duplication, fractionation and the origin of regulatory novelty

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Enrichment of gene-coding sequences in maize by genome filtration

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Maize genome sequencing by methylation filtration

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Characterization of three maize bacterial artificial chromosome libraries toward anchoring of the physical map to the genetic map using high-density bacterial artificial chromosome filter hybridization

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Intraspecific violation of genetic colinearity and its implications in maize

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Comparative genomics between rice and Arabidopsis shows scant collinearity in gene order

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Arabidopsis-rice: will colinearity allow gene prediction across the eudicot-monocot divide?

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

The paleontology of intergene retrotransposons of maize.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

A knob-associated tandem repeat in maize capable of forming fold-back DNA segments: are chromosome knobs megatransposons?

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Complex structure of knob DNA on maize chromosome 9. Retrotransposon invasion into heterochromatin.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Nested retrotransposons in the intergenic regions of the maize genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Knob heterochromatin homology in maize and its relatives

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913904

Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations.

11 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0704258104

The map-based sequence of the rice genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0704258104

Sequence and analysis of rice chromosome 4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0704258104

The genome sequence and structure of rice chromosome 1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0704258104

Structural analysis of the maize rp1 complex reveals numerous sites and unexpected mechanisms of local rearrangement.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0704258104

Comparative sequence analysis of colinear barley and rice bacterial artificial chromosomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0704258104

Gene identification in a complex chromosomal continuum by local genomic cross-referencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0704258104

Evidence that a Recent Increase in Maize Genome Size was Caused by the Massive Amplification of Intergene Retrotransposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0704258104

In-Depth View of Structure, Activity, and Evolution of Rice Chromosome 10

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0704258104

Distribution and clustering of two highly repeated sequences in the A and B chromosomes of maize

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17615239

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Expanding the genetic map of maize with the intermated B73 x Mo17 (IBM) population

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17615239

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0704258104

1 reference

10 August 2017

0 references

1 reference

10 August 2017

1 reference