The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair (Q35882335)

10 August 2017

The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair (English)

1 reference

10 August 2017

4

1 reference

10 August 2017

Kai Papenfort

1

0 references

author name string

Dimitri Podkaminski

series ordinal

2

1 reference

PMCID

3323961

10 August 2017

Jay C D Hinton

series ordinal

3

1 reference

PMCID

3323961

10 August 2017

language of work or name

English

0 references

publication date

1 March 2012

1 reference

Proceedings of the National Academy of Sciences of the United States of America

10 August 2017

1 reference

10 August 2017

109

1 reference

10 August 2017

13

1 reference

10 August 2017

E757-64

1 reference

Ancestral genes can control the ability of horizontally acquired loci to confer new traits

10 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Accessibility and evolutionary conservation mark bacterial small-rna target-binding regions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Salmonella pathogenicity island 1 (SPI-1) type III secretion of SopD involves N- and C-terminal signals and direct binding to the InvC ATPase

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Reprogramming of anaerobic metabolism by the FnrS small RNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Analysis of pools of targeted Salmonella deletion mutants identifies novel genes affecting fitness during competitive infection in mice

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Small RNA binding to 5' mRNA coding region inhibits translational initiation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

SopD acts cooperatively with SopB during Salmonella enterica serovar Typhimurium invasion

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Mlc regulation of Salmonella pathogenicity island I gene expression via hilE repression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

The novel transcription factor SgrR coordinates the response to glucose-phosphate stress

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Loss of Hfq activates the sigmaE-dependent envelope stress response in Salmonella enterica

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Pathogenicity islands: a molecular toolbox for bacterial virulence

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

H-NS mediates the silencing of laterally acquired genes in bacteria

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Mutational analysis of Salmonella translocated effector members SifA and SopD2 reveals domains implicated in translocation, subcellular localization and function

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Fast and effective prediction of microRNA/target duplexes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

The bacterial Sm-like protein Hfq: a key player in RNA transactions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Global analysis of small RNA and mRNA targets of Hfq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Duplication is more common among laterally transferred genes than among indigenous genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

SopD2 is a novel type III secreted effector of Salmonella typhimurium that targets late endocytic compartments upon delivery into host cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Complete genome sequence of Salmonella enterica serovar Typhimurium LT2

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Expression of the glucose transporter gene, ptsG, is regulated at the mRNA degradation step in response to glycolytic flux in Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Lateral gene transfer and the nature of bacterial innovation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Distribution of pathogenicity islands in Salmonella spp.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Identification of a pathogenicity island required for Salmonella survival in host cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Identification of a virulence locus encoding a second type III secretion system in Salmonella typhimurium

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Cloning and molecular characterization of genes whose products allow Salmonella typhimurium to penetrate tissue culture cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323961

Lateral gene transfer in Salmonella

27 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Control of Salmonella pathogenicity island-2 gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Hfq and its constellation of RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Effect of RyhB small RNA on global iron use in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Translational control and target recognition by Escherichia coli small RNAs in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

How microRNAs choose their targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Quantifying the sequence-function relation in gene silencing by bacterial small RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Topology links RNA secondary structure with global conformation, dynamics, and adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Competition among Hfq-binding small RNAs in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Systematic analysis of the SsrAB virulon of Salmonella enterica

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Gene amplification and adaptive evolution in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Salmonella host cell invasion emerged by acquisition of a mosaic of separate genetic elements, including Salmonella pathogenicity island 1 (SPI1), SPI5, and sopE2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Physiological consequences of small RNA-mediated regulation of glucose-phosphate stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1119414109

Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22383560

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1119414109

1 reference

10 August 2017

0 references

1 reference

10 August 2017

1 reference

PMCID

3323961