Determining in vivo phosphorylation sites using mass spectrometry (Q35903566)

11 August 2017

Determining in vivo phosphorylation sites using mass spectrometry (English)

1 reference

11 August 2017

1 reference

Susanne B Breitkopf

1

1 reference

PMCID

3332032

11 August 2017

John M Asara

series ordinal

2

1 reference

11 August 2017

1 April 2012

1 reference

Current protocols in molecular biology

11 August 2017

1 reference

11 August 2017

Chapter 18

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11 August 2017

Unit18.19.1-27

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PMCID

3332032

describes a project that uses

11 August 2017

1 reference

Using tandem mass spectrometry in targeted mode to identify activators of class IA PI3K in cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Andromeda: a peptide search engine integrated into the MaxQuant environment

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Decoding signalling networks by mass spectrometry-based proteomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Coupling liquid chromatography to Orbitrap mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Phosphopeptide fragmentation and analysis by mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Utility of mass spectrometry for proteome analysis: part I. Conceptual and experimental approaches

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Quantitative phosphoproteomic analysis of signaling network dynamics.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

AMPK phosphorylation of raptor mediates a metabolic checkpoint

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

SIMAC (sequential elution from IMAC), a phosphoproteomics strategy for the rapid separation of monophosphorylated from multiply phosphorylated peptides

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Proteomic analysis of proteins from bronchoalveolar lavage fluid reveals the action mechanism of ultrafine carbon black-induced lung injury in mice

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Immunoaffinity profiling of tyrosine phosphorylation in cancer cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Large-scale characterization of HeLa cell nuclear phosphoproteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

The protein kinase complement of the human genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Rapid mass spectrometric identification of proteins from two-dimensional polyacrylamide gels after in gel proteolytic digestion.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Transforming gene product of Rous sarcoma virus phosphorylates tyrosine

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332032

Enhanced detection of phosphopeptides in matrix-assisted laser desorption/ionization mass spectrometry using ammonium salts

27 July 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Phosphopeptide detection and sequencing by matrix-assisted laser desorption/ionization quadrupole time-of-flight tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Proteomics analysis of cellular imatinib targets and their candidate downstream effectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Characterization of Rictor phosphorylation sites reveals direct regulation of mTOR complex 2 by S6K1

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Phosphorylation of ULK1 (hATG1) by AMP-activated protein kinase connects energy sensing to mitophagy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Catch me if you can: mass spectrometry-based phosphoproteomics and quantification strategies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Inhibition of PI3K binding to activators by serine phosphorylation of PI3K regulatory subunit p85alpha Src homology-2 domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Large-scale proteomics analysis of the human kinome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Regulation and identification of Na,K-ATPase alpha1 subunit phosphorylation in rat parotid acinar cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Inhibition of RIP2's tyrosine kinase activity limits NOD2-driven cytokine responses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

An automated multidimensional protein identification technology for shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Proteomics by mass spectrometry: approaches, advances, and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Highly selective enrichment of phosphorylated peptides using titanium dioxide

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB1819S98

Comparison of ERLIC-TiO2, HILIC-TiO2, and SCX-TiO2 for global phosphoproteomics approaches

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22470061

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Chromatographic and mass spectrometric methods for the identification of phosphorylation sites in phosphoproteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22470061

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Sample preparation and in-solution protease digestion of proteins for chromatography-based proteomic analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22470061

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/0471142727.MB1819S98

1 reference

11 August 2017

1 reference

11 August 2017

1 reference

PMCID

3332032