The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods (Q35914038)

11 August 2017

The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods (English)

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11 August 2017

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4

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11 August 2017

6

Cedric Notredame

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Iain M Wallace

object named as

Iain M Wallace

series ordinal

3

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Sébastien Moretti

series ordinal

1

object named as

Sebastien Moretti

1 reference

11 August 2017

Fabrice Armougom

2

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PMCID

1933118

11 August 2017

Cornelius V Jongeneel

series ordinal

5

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PMCID

1933118

11 August 2017

language of work or name

English

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publication date

25 May 2007

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11 August 2017

Nucleic Acids Research

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11 August 2017

35

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11 August 2017

Web Server issue

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11 August 2017

W645-8

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M-Coffee: combining multiple sequence alignment methods with T-Coffee

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

Automatic assessment of alignment quality

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

JIGSAW: integration of multiple sources of evidence for gene prediction

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

Multiple sequence alignments

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

ProbCons: Probabilistic consistency-based multiple sequence alignment

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

MAFFT version 5: improvement in accuracy of multiple sequence alignment

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

MUSCLE: multiple sequence alignment with high accuracy and high throughput

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

Combining many multiple alignments in one improved alignment.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

JPred: a consensus secondary structure prediction server

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

HOMSTRAD: a database of protein structure alignments for homologous families

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

Motif recognition and alignment for many sequences by comparison of dot-matrices.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

Consistency of optimal sequence alignments

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

Multiple sequence alignment.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

PCMA: fast and accurate multiple sequence alignment based on profile consistency.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

Multiple sequence alignment using partial order graphs

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

T-Coffee: A novel method for fast and accurate multiple sequence alignment

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933118

BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17526519

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM333

1 reference

journals/nar/MorettiAWHJN07

11 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

11 August 2017

1 reference

PMCID

1933118