Evidence that binding of C5 protein to P RNA enhances ribozyme catalysis by influencing active site metal ion affinity (Q35946148)

11 August 2017

Evidence that binding of C5 protein to P RNA enhances ribozyme catalysis by influencing active site metal ion affinity (English)

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11 August 2017

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Lei Sun

1

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11 August 2017

Michael E Harris

series ordinal

2

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11 August 2017

language of work or name

English

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publication date

25 July 2007

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11 August 2017

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11 August 2017

13

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11 August 2017

9

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11 August 2017

1505-1515

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describes a project that uses

11 August 2017

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1950769/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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Bacterial RNase P: a new view of an ancient enzyme

2 October 2017

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2 October 2017

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Extraordinary rates of transition metal ion-mediated ribozyme catalysis

2 October 2017

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RNA splicing: group I intron crystal structures reveal the basis of splice site selection and metal ion catalysis

2 October 2017

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RNase P: interface of the RNA and protein worlds

2 October 2017

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2 October 2017

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2 October 2017

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Protein activation of a ribozyme: the role of bacterial RNase P protein

2 October 2017

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Structural evidence for a two-metal-ion mechanism of group I intron splicing

2 October 2017

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Functional identification of catalytic metal ion binding sites within RNA.

2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

Mobile group II introns

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Ionic interactions between PRNA and P protein in Bacillus subtilis RNase P characterized using a magnetocapture-based assay

2 October 2017

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Fluorescence measurements of free [Mg2+] by use of mag-fura 2 in Salmonella enterica

2 October 2017

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Roles of protein subunits in RNA-protein complexes: lessons from ribonuclease P.

2 October 2017

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Metal ion binding to catalytic RNA molecules

2 October 2017

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Elucidation of structure-function relationships in the protein subunit of bacterial RNase P using a genetic complementation approach

2 October 2017

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Dissection of a metal-ion-mediated conformational change in Tetrahymena ribozyme catalysis

2 October 2017

1 reference

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Metal ion coordination by the AGC triad in domain 5 contributes to group II intron catalysis

2 October 2017

1 reference

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Defining the catalytic metal ion interactions in the Tetrahymena ribozyme reaction

2 October 2017

1 reference

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Ribonuclease P: a ribonucleoprotein enzyme

2 October 2017

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Three metal ions at the active site of the Tetrahymena group I ribozyme

2 October 2017

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Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA

2 October 2017

1 reference

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Evolutionary variation in bacterial RNase P RNAs

2 October 2017

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In vitro selection for altered divalent metal specificity in the RNase P RNA.

2 October 2017

1 reference

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Ribonuclease P (RNase P) RNA is converted to a Cd(2+)-ribozyme by a single Rp-phosphorothioate modification in the precursor tRNA at the RNase P cleavage site

2 October 2017

1 reference

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Slow folding kinetics of RNase P RNA.

2 October 2017

1 reference

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Metal ion catalysis in the Tetrahymena ribozyme reaction

2 October 2017

1 reference

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A general two-metal-ion mechanism for catalytic RNA

2 October 2017

1 reference

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Protein facilitation of group I intron splicing by assembly of the catalytic core and the 5' splice site domain

2 October 2017

1 reference

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Further perspective on the catalytic core and secondary structure of ribonuclease P RNA

2 October 2017

1 reference

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Stability constants of magnesium and cadmium complexes of adenine nucleotides and thionucleotides and rate constants for formation and dissociation of magnesium-ATP and magnesium-ADP

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

Evidence that substrate-specific effects of C5 protein lead to uniformity in binding and catalysis by RNase P.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

Ribonuclease P catalysis requires Mg2+ coordinated to the pro-RP oxygen of the scissile bond.

11 July 2018

1 reference

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Evolution in vitro of an RNA enzyme with altered metal dependence

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

Influence of metal ions on the ribonuclease P reaction. Distinguishing substrate binding from catalysis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

The P4 metal binding site in RNase P RNA affects active site metal affinity through substrate positioning

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

RNA-dependent folding and stabilization of C5 protein during assembly of the E. coli RNase P holoenzyme.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

8-hydroxyquinoline derivatives as fluorescent sensors for magnesium in living cells

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

Hammerheads derived from sTRSV show enhanced cleavage and ligation rate constants.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

The pre-tRNA nucleotide base and 2'-hydroxyl at N(-1) contribute to fidelity in tRNA processing by RNase P.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

Analysis of solvent nucleophile isotope effects: evidence for concerted mechanisms and nucleophilic activation by metal coordination in nonenzymatic and ribozyme-catalyzed phosphodiester hydrolysis

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

Magnesium dependence of the amplified conformational switch in the trans-acting hepatitis delta virus ribozyme

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

Catalysis by RNase P RNA: unique features and unprecedented active site plasticity

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

Evidence for direct attack by hydroxide in phosphodiester hydrolysis

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

Involvement of a specific metal ion in the transition of the hammerhead ribozyme to its catalytic conformation.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1950769

Recognition of a pre-tRNA substrate by the Bacillus subtilis RNase P holoenzyme

24 September 2018

1 reference

12 December 2020

Metal Activation of Enzymes in Nucleic Acid Biochemistry

1 reference

12 December 2020

Crystal structure of the RNA component of bacterial ribonuclease P

1 reference

12 December 2020

A kinetic mechanism for cleavage of precursor tRNA(Asp) catalyzed by the RNA component of Bacillus subtilis ribonuclease P

1 reference

12 December 2020

Kinetic analysis of the M1 RNA folding pathway

1 reference

12 December 2020

Structural perspective on the activation of RNase P RNA by protein

1 reference

12 December 2020

Mg2+-dependent compaction and folding of yeast tRNAPhe and the catalytic domain of the B. subtilis RNase P RNA determined by small-angle X-ray scattering

1 reference

12 December 2020

Multiple magnesium ions in the ribonuclease P reaction mechanism

1 reference

12 December 2020

Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp

1 reference

12 December 2020

The cleavage step of ribonuclease P catalysis is determined by ribozyme-substrate interactions both distal and proximal to the cleavage site

1 reference

12 December 2020

The affinity of magnesium binding sites in the Bacillus subtilis RNase P x pre-tRNA complex is enhanced by the protein subunit

1 reference

12 December 2020

Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity

1 reference

12 December 2020

The maturase encoded by a group I intron from Aspergillus nidulans stabilizes RNA tertiary structure and promotes rapid splicing

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.571007

1 reference

release_fodrry6j4ncjbllncbqrnk7whu

11 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/fodrry6j4ncjbllncbqrnk7whu

24 November 2022

mapped directly with Wikidata item

1 reference

11 August 2017

PubMed publication ID

17652407

1 reference