Bacterial RNase P: a new view of an ancient enzyme (Q36596477)

15 August 2017

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title

Bacterial RNase P: a new view of an ancient enzyme (English)

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15 August 2017

Alexei V Kazantsev

1

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PubMed ID

16980936

15 August 2017

Norman R Pace

series ordinal

2

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PubMed ID

16980936

15 August 2017

language of work or name

English

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publication date

1 October 2006

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Nature Reviews Microbiology

15 August 2017

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15 August 2017

4

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15 August 2017

10

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15 August 2017

729-740

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https://scigraph.springernature.com/pub.10.1038/nrmicro1491

15 August 2017

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cites work

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The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

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RNase P RNAs from some Archaea are catalytically active

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Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP

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Human ribonuclease P: subunits, function, and intranuclear localization

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RNase P: interface of the RNA and protein worlds

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Ribonuclease P substrate specificity: cleavage of a bacteriophage phi80-induced RNA.

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Novel reactions of RNAase P with a tRNA-like structure in turnip yellow mosaic virus RNA.

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A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli

31 March 2020

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Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA.

31 March 2020

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Precursor of C4 antisense RNA of bacteriophages P1 and P7 is a substrate for RNase P of Escherichia coli

31 March 2020

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RNase P cleaves transient structures in some riboswitches

31 March 2020

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Tyrosine tRNA precursor molecule polynucleotide sequence

31 March 2020

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Multiple magnesium ions in the ribonuclease P reaction mechanism

31 March 2020

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A kinetic mechanism for cleavage of precursor tRNA(Asp) catalyzed by the RNA component of Bacillus subtilis ribonuclease P

31 March 2020

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Catalysis by RNase P RNA: unique features and unprecedented active site plasticity

31 March 2020

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Analysis of solvent nucleophile isotope effects: evidence for concerted mechanisms and nucleophilic activation by metal coordination in nonenzymatic and ribozyme-catalyzed phosphodiester hydrolysis

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Metal ion cooperativity in ribozyme cleavage of RNA.

31 March 2020

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Studies on Escherichia coli RNase P RNA with Zn2+ as the catalytic cofactor

31 March 2020

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The naturally trans-acting ribozyme RNase P RNA has leadzyme properties

31 March 2020

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Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp

31 March 2020

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Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P.

31 March 2020

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Mg2+-dependent folding of a large ribozyme without kinetic traps

31 March 2020

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Kinetic analysis of the M1 RNA folding pathway

31 March 2020

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Ribonuclease P (RNase P) RNA is converted to a Cd(2+)-ribozyme by a single Rp-phosphorothioate modification in the precursor tRNA at the RNase P cleavage site

31 March 2020

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Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilis

31 March 2020

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A general two-metal-ion mechanism for catalytic RNA

31 March 2020

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Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity

31 March 2020

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Structural evidence for a two-metal-ion mechanism of group I intron splicing

31 March 2020

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Structural and functional insights provided by crystal structures of DNA polymerases and their substrate complexes.

31 March 2020

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Getting a grip: polymerases and their substrate complexes

31 March 2020

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Crystal structures of RNase H bound to an RNA/DNA hybrid: substrate specificity and metal-dependent catalysis

31 March 2020

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Type II restriction endonucleases: structure and mechanism

31 March 2020

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Homing endonuclease structure and function

31 March 2020

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5S RNA secondary structure

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1491

Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA--a review

31 March 2020

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Comparative analysis of ribonuclease P RNA using gene sequences from natural microbial populations reveals tertiary structural elements

31 March 2020

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Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme

31 March 2020

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Evolutionary variation in bacterial RNase P RNAs

31 March 2020

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Three-dimensional working model of M1 RNA, the catalytic RNA subunit of ribonuclease P from Escherichia coli

31 March 2020

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Photoaffinity cross-linking and RNA structure analysis

31 March 2020

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Comparative photocross-linking analysis of the tertiary structures of Escherichia coli and Bacillus subtilis RNase P RNAs.

31 March 2020

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Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis.

31 March 2020

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New insight into RNase P RNA structure from comparative analysis of the archaeal RNA.

31 March 2020

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Structural implications of novel diversity in eucaryal RNase P RNA

31 March 2020

1 reference

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Effects of phosphorothioate modifications on precursor tRNA processing by eukaryotic RNase P enzymes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Evidence for an RNA-based catalytic mechanism in eukaryotic nuclear ribonuclease P.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Chloroplast ribonuclease P does not utilize the ribozyme-type pre-tRNA cleavage mechanism

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Crystal structure of the RNA component of bacterial ribonuclease P

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Crystal structure of a bacterial ribonuclease P RNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Basis for structural diversity in homologous RNAs

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Crystal structure of the specificity domain of ribonuclease P

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

The Bacillus subtilis RNase P holoenzyme contains two RNase P RNA and two RNase P protein subunits

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Protein activation of a ribozyme: the role of bacterial RNase P protein

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Structural motifs in RNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

31 March 2020

Analysis of RNA motifs

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

RNA structure: the long and the short of it.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Crystal structure of a group I ribozyme domain: principles of RNA packing

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

RNA enzymes: putting together a large ribozyme

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Sequence and structural conservation in RNA ribose zippers

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

RNA tertiary structure mediation by adenosine platforms

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

On the occurrence of the T-loop RNA folding motif in large RNA molecules

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Rp-phosphorothioate modifications in RNase P RNA that interfere with tRNA binding.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Guanosine 2-NH2 groups of Escherichia coli RNase P RNA involved in intramolecular tertiary contacts and direct interactions with tRNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Identification of adenosine functional groups involved in substrate binding by the ribonuclease P ribozyme

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Distinct modes of mature and precursor tRNA binding to Escherichia coli RNase P RNA revealed by NAIM analyses

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Purine N7 groups that are crucial to the interaction of Escherichia coli rnase P RNA with tRNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Interaction of structural modules in substrate binding by the ribozyme from Bacillus subtilis RNase P.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Mapping the active site of ribonuclease P RNA using a substrate containing a photoaffinity agent.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

In vitro selection for altered divalent metal specificity in the RNase P RNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Evidence for a polynuclear metal ion binding site in the catalytic domain of ribonuclease P RNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Specific phosphorothioate substitutions probe the active site of Bacillus subtilis ribonuclease P.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Ribonuclease P protein structure: evolutionary origins in the translational apparatus

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

High-resolution structure of RNase P protein from Thermotoga maritima

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

The structure of ribonuclease P protein from Staphylococcus aureus reveals a unique binding site for single-stranded RNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Analysis of the functional role of conserved residues in the protein subunit of ribonuclease P from Escherichia coli.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Mapping RNA-protein interactions in ribonuclease P from Escherichia coli using electron paramagnetic resonance spectroscopy.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Mapping RNA-protein interactions in ribonuclease P from Escherichia coli using disulfide-linked EDTA-Fe

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Molecular modeling of the three-dimensional structure of the bacterial RNase P holoenzyme

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Mapping in three dimensions of regions in a catalytic RNA protected from attack by an Fe(II)-EDTA reagent.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Recognition of a pre-tRNA substrate by the Bacillus subtilis RNase P holoenzyme

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Bacterial ribonuclease P holoenzyme crosslinking analysis reveals protein interaction sites on the RNA subunit

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Potential contact sites between the protein and RNA subunit in the Bacillus subtilis RNase P holoenzyme

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Structural perspective on the activation of RNase P RNA by protein

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Model substrates for an RNA enzyme

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Several regions of a tRNA precursor determine the Escherichia coli RNase P cleavage site.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Probing of tertiary interactions in RNA: 2'-hydroxyl-base contacts between the RNase P RNA and pre-tRNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Recognition of the T stem-loop of a pre-tRNA substrate by the ribozyme from Bacillus subtilis ribonuclease P

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Interaction of the 3′-end of tRNA with ribonuclease P RNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Kinetics and thermodynamics of the RNase P RNA cleavage reaction: analysis of tRNA 3'-end variants.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Endonucleolytic processing of CCA-less tRNA precursors by RNase Z in Bacillus subtilis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Differential role of the intermolecular base-pairs G292-C(75) and G293-C(74) in the reaction catalyzed by Escherichia coli RNase P RNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Importance of the +73/294 interaction in Escherichia coli RNase P RNA substrate complexes for cleavage and metal ion coordination

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Complexity in orchestration of chemical groups near different cleavage sites in RNase P RNA mediated cleavage

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Cross talk between the +73/294 interaction and the cleavage site in RNase P RNA mediated cleavage

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Recognition of the 5' leader of pre-tRNA substrates by the active site of ribonuclease P.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

The pre-tRNA nucleotide base and 2'-hydroxyl at N(-1) contribute to fidelity in tRNA processing by RNase P.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

RNase P RNA structure and cleavage reflect the primary structure of tRNA genes 1 1Edited by J. Karn

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Recognition of the 5' leader and the acceptor stem of a pre-tRNA substrate by the ribozyme from Bacillus subtilis RNase P.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Exploring the minimal substrate requirements for trans-cleavage by RNase P holoenzymes from Escherichia coli and Bacillus subtilis.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

The 5' leader of precursor tRNAAsp bound to the Bacillus subtilis RNase P holoenzyme has an extended conformation.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

The P4 metal binding site in RNase P RNA affects active site metal affinity through substrate positioning

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

How many catalytic RNAs? Ions and the Cheshire cat conjecture.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

Type A and B RNase P RNAs are interchangeable in vivo despite substantial biophysical differences.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1491

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Identifiers

DOI

10.1038/NRMICRO1491

1 reference

15 August 2017

1 reference

PubMed ID

16980936