Searching for non-B DNA-forming motifs using nBMST (non-B DNA motif search tool) (Q35954644)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22470144%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

title

Searching for non-B DNA-forming motifs using nBMST (non-B DNA motif search tool) (English)

1 reference

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27 January 2020

1 reference

8

1 reference

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27 January 2020

Duncan E Donohue

3

1 reference

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27 January 2020

Ming Yi

6

1 reference

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27 January 2020

author name string

R Z Cer

1

1 reference

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27 January 2020

K H Bruce

2

1 reference

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27 January 2020

N A Temiz

4

1 reference

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27 January 2020

U S Mudunuri

5

1 reference

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27 January 2020

N Volfovsky

7

1 reference

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27 January 2020

B T Luke

9

1 reference

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27 January 2020

J R Collins

10

1 reference

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27 January 2020

R M Stephens

11

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27 January 2020

publication date

1 April 2012

1 reference

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Current protocols in human genetics / editorial board, Nicholas C, Dracapoli ... [et al.]

27 January 2020

published in

1 reference

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27 January 2020

volume

Chapter 18

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27 January 2020

page(s)

Unit 18.7.1-22

1 reference

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Inverted genomic segments and complex triplication rearrangements are mediated by inverted repeats in the human genome

27 January 2020

cites work

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Transcription-induced DNA toxicity at trinucleotide repeats: double bubble is trouble

2 October 2017

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Non-ATG-initiated translation directed by microsatellite expansions

2 October 2017

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Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes

2 October 2017

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Mechanisms of trinucleotide repeat instability during human development

2 October 2017

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A Palindrome-Mediated Recurrent Translocation with 3:1 Meiotic Nondisjunction: The t(8;22)(q24.13;q11.21)

2 October 2017

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The constitutional t(11;22): implications for a novel mechanism responsible for gross chromosomal rearrangements.

2 October 2017

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Polymorphisms of the 22q11.2 breakpoint region influence the frequency of de novo constitutional t(11;22)s in sperm.

2 October 2017

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Long intronic GAA repeats causing Friedreich ataxia impede transcription elongation

2 October 2017

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Repeat instability as the basis for human diseases and as a potential target for therapy

2 October 2017

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Structural variation in the human genome and its role in disease

2 October 2017

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TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome

2 October 2017

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MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains

2 October 2017

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Non-B DNA structure-induced genetic instability and evolution

2 October 2017

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Non-B DNA conformations as determinants of mutagenesis and human disease

2 October 2017

1 reference

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Human genomic Z-DNA segments probed by the Z alpha domain of ADAR1.

2 October 2017

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Molecular mechanisms underlying polyalanine diseases

2 October 2017

1 reference

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Microsatellite repeat instability and neurological disease

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3350812

Intergenerational and striatal CAG repeat instability in Huntington's disease knock-in mice involve different DNA repair genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3350812

Molecular mechanisms and diagnosis of chromosome 22q11.2 rearrangements

2 October 2017

1 reference

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Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition

2 October 2017

1 reference

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DNA triplexes and Friedreich ataxia

2 October 2017

1 reference

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ATR protects the genome against CGG.CCG-repeat expansion in Fragile X premutation mice

2 October 2017

1 reference

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Expandable DNA repeats and human disease.

2 October 2017

1 reference

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Non-B DNA conformations, mutagenesis and disease

2 October 2017

1 reference

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Trinucleotide Repeat Disorders

2 October 2017

1 reference

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Triplet repeat mutation length gains correlate with cell-type specific vulnerability in Huntington disease brain

2 October 2017

1 reference

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A web-based search engine for triplex-forming oligonucleotide target sequences

2 October 2017

1 reference

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Chromosomal translocations mediated by palindromic DNA.

2 October 2017

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DNA architecture: from G to Z.

2 October 2017

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GRSDB: a database of quadruplex forming G-rich sequences in alternatively processed mammalian pre-mRNA sequences

2 October 2017

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Repeat instability: mechanisms of dynamic mutations

2 October 2017

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Advances in mechanisms of genetic instability related to hereditary neurological diseases

2 October 2017

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Non-B DNA conformations, genomic rearrangements, and human disease

2 October 2017

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Pms2 is a genetic enhancer of trinucleotide CAG.CTG repeat somatic mosaicism: implications for the mechanism of triplet repeat expansion

2 October 2017

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TRACTS: A program to map oligopurine.oligopyrimidine and other binary DNA tracts

2 October 2017

1 reference

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The generic genome browser: a building block for a model organism system database

2 October 2017

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Msh2 deficiency prevents in vivo somatic instability of the CAG repeat in Huntington disease transgenic mice

2 October 2017

1 reference

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The second case of a t(17;22) in a family with neurofibromatosis type 1: sequence analysis of the breakpoint regions

2 October 2017

1 reference

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Molecular analysis of a variant 18;22 translocation in a case of lymphocytic lymphoma.

2 October 2017

1 reference

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The frequency and mutation rate of balanced autosomal rearrangements in man estimated from prenatal genetic studies for advanced maternal age

2 October 2017

1 reference

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Alternating purine-pyrimidine tracts may promote chromosomal translocations seen in a variety of human lymphoid tumours

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3350812

A chromosome 12 coding region is juxtaposed to the MYC protooncogene locus in a t(8;12)(q24;q22) translocation in a case of B-cell chronic lymphocytic leukemia

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3350812

RAF gene fusion breakpoints in pediatric brain tumors are characterized by significant enrichment of sequence microhomology

2 October 2017

1 reference

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An alternative DNA structure is necessary for pilin antigenic variation in Neisseria gonorrhoeae

11 July 2018

1 reference

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Chromosomal instability mediated by non-B DNA: cruciform conformation and not DNA sequence is responsible for recurrent translocation in humans.

11 July 2018

1 reference

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Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences

11 July 2018

1 reference

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QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences

11 July 2018

1 reference

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Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes.

11 July 2018

1 reference

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Instability of the fragile X syndrome repeat in mice: the effect of age, diet and mutations in genes that affect DNA replication, recombination and repair proficiency

11 July 2018

1 reference

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Msh3 is a limiting factor in the formation of intergenerational CTG expansions in DM1 transgenic mice.

21 January 2018

1 reference

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Molecular cloning of a translocation breakpoint hotspot in 22q11.

21 January 2018

1 reference

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Analysis of a breakpoint cluster reveals insight into the mechanism of intrachromosomal amplification in a lymphoid malignancy

21 January 2018

1 reference

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Somatic expansion behaviour of the (CTG)n repeat in myotonic dystrophy knock-in mice is differentially affected by Msh3 and Msh6 mismatch-repair proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142905.HG1807S73

Mismatch repair gene Msh2 modifies the timing of early disease in Hdh(Q111) striatum

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142905.HG1807S73

QuadBase: genome-wide database of G4 DNA--occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142905.HG1807S73

Greglist: a database listing potential G-quadruplex regulated genes

21 January 2018

1 reference

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Potential Z-DNA elements surround the breakpoints of chromosome translocation within the 5' flanking region of bcl-2 gene

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3350812

ETV6-AML1 translocation breakpoints cluster near a purine/pyrimidine repeat region in the ETV6 gene

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22470144

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structure and possible mechanisms of TEL-AML1 gene fusions in childhood acute lymphoblastic leukemia

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22470144

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/0471142905.HG1807S73

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22470144%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22470144%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

PubMed publication ID

22470144

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22470144%20AND%20SRC:MED&resulttype=core&format=json