lobSTR: A short tandem repeat profiler for personal genomes (Q36021694)

11 August 2017

lobSTR: A short tandem repeat profiler for personal genomes (English)

1 reference

11 August 2017

1 reference

1

Melissa Gymrek

1 reference

11 August 2017

3

Saharon Rosset

1 reference

11 August 2017

David Golan

2

1 reference

11 August 2017

Yaniv Erlich

series ordinal

4

1 reference

11 August 2017

20 April 2012

1 reference

11 August 2017

1 reference

11 August 2017

22

1 reference

11 August 2017

6

1 reference

11 August 2017

1154-1162

1 reference

Performance comparison of whole-genome sequencing platforms

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Repetitive DNA and next-generation sequencing: computational challenges and solutions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Accurate and comprehensive sequencing of personal genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Variation in genome-wide mutation rates within and between human families

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Exome sequencing and disease-network analysis of a single family implicate a mutation in KIF1A in hereditary spastic paraparesis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Improving human forensics through advances in genetics, genomics and molecular biology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Evaluation of microsatellite variation in the 1000 Genomes Project pilot studies is indicative of the quality and utility of the raw data and alignments

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Genetic history of an archaic hominin group from Denisova Cave in Siberia

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

A map of human genome variation from population-scale sequencing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic implications.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

A Genomic Portrait of Human Microsatellite Variation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

A survey of sequence alignment algorithms for next-generation sequencing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

A Draft Sequence of the Neandertal Genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

BEDTools: a flexible suite of utilities for comparing genomic features

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Sequence determinants of human microsatellite variability.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Decreased rate of evolution in Y chromosome STR loci of increased size of the repeat unit

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Cell lineage analysis of a mouse tumor

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Genomic rearrangements and sporadic disease

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Expandable DNA repeats and human disease.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Genotyping errors: causes, consequences and solutions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Repeat instability: mechanisms of dynamic mutations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Microsatellites: simple sequences with complex evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

BLAT—The BLAST-Like Alignment Tool

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Estimating the time to the most recent common ancestor for the Y chromosome or mitochondrial DNA for a pair of individuals

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Genotyping for human whole-genome scans: past, present, and future

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Identification and analysis of error types in high-throughput genotyping

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Tandem repeats finder: a program to analyze DNA sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Short GCG expansions in the PABP2 gene cause oculopharyngeal muscular dystrophy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Relative mutation rates at di-, tri-, and tetranucleotide microsatellite loci

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Y chromosomes of Jewish priests

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Altered growth and branching patterns in synpolydactyly caused by mutations in HOXD13

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371701

Heterogeneous mutation processes in human microsatellite DNA sequences

2 October 2017

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22522390

12 December 2020

inferred from PubMed ID database lookup

A study of the origin of 'shadow bands' seen when typing dinucleotide repeat polymorphisms by the PCR

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22522390

12 December 2020

inferred from PubMed ID database lookup

A collection of ordered tetranucleotide-repeat markers from the human genome. The Utah Marker Development Group

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22522390

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1101/GR.135780.111

1 reference

release_56j5ehd3j5gknphkxnrsj4lm24

11 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/56j5ehd3j5gknphkxnrsj4lm24

24 November 2022

mapped directly with Wikidata item

1 reference

11 August 2017

PubMed publication ID

22522390

1 reference