Genome-wide studies of the multi-zinc finger Drosophila Suppressor of Hairy-wing protein in the ovary (Q36061933)

11 August 2017

Genome-wide studies of the multi-zinc finger Drosophila Suppressor of Hairy-wing protein in the ovary (English)

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11 August 2017

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Alexey A Soshnev

1

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11 August 2017

Bing He

2

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11 August 2017

Ryan M Baxley

3

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11 August 2017

Nan Jiang

4

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11 August 2017

Craig M Hart

5

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11 August 2017

Kai Tan

6

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11 August 2017

Pamela K Geyer

7

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11 August 2017

language of work or name

English

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publication date

9 March 2012

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11 August 2017

17

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based on heuristic

inferred from page(s)

published in

Nucleic Acids Research

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11 August 2017

40

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11 August 2017

12

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11 August 2017

5415-5431

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Creative Commons Attribution-NonCommercial 3.0 Unported

11 August 2017

start time

7 November 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3384341/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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Chromatin insulators: a role in nuclear organization and gene expression

2 October 2017

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The role of the Suppressor of Hairy-wing insulator protein in Drosophila oogenesis.

2 October 2017

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Global analysis of the relationship between JIL-1 kinase and transcription.

2 October 2017

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Support for multiple classes of local expression clusters in Drosophila melanogaster, but no evidence for gene order conservation

2 October 2017

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Locking the genome: nuclear organization and cell fate

2 October 2017

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Disruption of genomic neighbourhood at the imprinted IGF2-H19 locus in Beckwith-Wiedemann syndrome and Silver-Russell syndrome

2 October 2017

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Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

2 October 2017

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The chromodomains of CHD1 are critical for enzymatic activity but less important for chromatin localization

2 October 2017

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Aligning short sequencing reads with Bowtie

2 October 2017

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The insulator protein SU(HW) fine-tunes nuclear lamina interactions of the Drosophila genome

2 October 2017

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Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

2 October 2017

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Identification of conserved Drosophila-specific euchromatin-restricted non-coding sequence motifs

2 October 2017

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The gypsy insulator of Drosophila melanogaster, together with its binding protein suppressor of Hairy-wing, facilitate high and precise expression of transgenes in Arabidopsis thaliana

2 October 2017

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Insulators and promoters: closer than we think

2 October 2017

1 reference

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The discovery of zinc fingers and their applications in gene regulation and genome manipulation.

2 October 2017

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Vertebrate Protein CTCF and its Multiple Roles in a Large-Scale Regulation of Genome Activity

2 October 2017

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A comprehensive map of insulator elements for the Drosophila genome

2 October 2017

1 reference

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Does CTCF mediate between nuclear organization and gene expression?

2 October 2017

1 reference

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Chromatin insulators: lessons from the fly.

2 October 2017

1 reference

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CTCF: master weaver of the genome

2 October 2017

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Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions

2 October 2017

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Active promoters and insulators are marked by the centrosomal protein 190.

2 October 2017

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Drosophila Kismet regulates histone H3 lysine 27 methylation and early elongation by RNA polymerase II

2 October 2017

1 reference

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Context differences reveal insulator and activator functions of a Su(Hw) binding region

2 October 2017

1 reference

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Investigation of the properties of non-gypsy suppressor of hairy-wing-binding sites

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

RBF1 promotes chromatin condensation through a conserved interaction with the Condensin II protein dCAP-D3

2 October 2017

1 reference

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Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes

2 October 2017

1 reference

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Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila

2 October 2017

1 reference

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We gather together: insulators and genome organization

2 October 2017

1 reference

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Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila

2 October 2017

1 reference

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Using FlyAtlas to identify better Drosophila melanogaster models of human disease

2 October 2017

1 reference

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Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

2 October 2017

1 reference

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Identification of genomic sites that bind the Drosophila suppressor of Hairy-wing insulator protein

2 October 2017

1 reference

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WebLogo: A Sequence Logo Generator

2 October 2017

1 reference

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Genomic insulators: connecting properties to mechanism

2 October 2017

1 reference

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The Drosophila BRM complex facilitates global transcription by RNA polymerase II

2 October 2017

1 reference

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Evidence for large domains of similarly expressed genes in the Drosophila genome

2 October 2017

1 reference

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Tumor-associated zinc finger mutations in the CTCF transcription factor selectively alter tts DNA-binding specificity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Insulation of enhancer-promoter communication by a gypsy transposon insert in the Drosophila cut gene: cooperation between suppressor of hairy-wing and modifier of mdg4 proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Interactions between the Su(Hw) and Mod(mdg4) proteins required for gypsy insulator function

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Enhancer blocking by the Drosophila gypsy insulator depends upon insulator anatomy and enhancer strength.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Specificity, free energy and information content in protein-DNA interactions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

The role of insulator elements in defining domains of gene expression.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

The DNA-binding and enhancer-blocking domains of the Drosophila suppressor of Hairy-wing protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

A P element containing suppressor of hairy-wing binding regions has novel properties for mutagenesis in Drosophila melanogaster.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Interactions of human replication protein A with oligonucleotides

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Drosophila melanogaster mutations suppressible by the suppressor of Hairy-wing are insertions of a 7.3-kilobase mobile element

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Sequences of the gypsy transposon of Drosophila necessary for its effects on adjacent genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Mutant gene phenotypes mediated by a Drosophila melanogaster retrotransposon require sequences homologous to mammalian enhancers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Reversion of a gypsy-induced mutation at the yellow (y) locus of Drosophila melanogaster is associated with the insertion of a newly defined transposable element

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

The Drosophila su(Hw) gene, which controls the phenotypic effect of the gypsy transposable element, encodes a putative DNA-binding protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Sequence logos: a new way to display consensus sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Chromatin insulators specifically associate with different levels of higher-order chromatin organization in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Large clusters of co-expressed genes in the Drosophila genome.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

A drosophila protein that imparts directionality on a chromatin insulator is an enhancer of position-effect variegation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

The Drosophila melanogaster suppressor of Hairy-wing protein binds to specific sequences of the gypsy retrotransposon

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Evolutionarily conserved E(y)2/Sus1 protein is essential for the barrier activity of Su(Hw)-dependent insulators in Drosophila

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Genomic and functional evolution of the Drosophila melanogaster sperm proteome.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

The ubiquitin ligase dTopors directs the nuclear organization of a chromatin insulator

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

The centrosomal protein CP190 is a component of the gypsy chromatin insulator

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

A leucine zipper domain of the suppressor of Hairy-wing protein mediates its repressive effect on enhancer function

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

Oogenesis in the suppressor2 of hairy-wing mutant ofDrosophila melanogaster. I. Phenotypic characterization and transplantation experiments

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

The gypsy retrotransposon of Drosophila melanogaster: mechanisms of mutagenesis and interaction with the suppressor of Hairy-wing locus.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384341

23 September 2018

Identifiers

DOI

10.1093/NAR/GKS225

1 reference

11 August 2017

1 reference

11 August 2017

PubMed publication ID

22406832

1 reference