Toward a standard in structural genome annotation for prokaryotes (Q36066554)

12 August 2017

Toward a standard in structural genome annotation for prokaryotes (English)

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12 August 2017

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9

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12 August 2017

10

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12 August 2017

Samuel H Payne

8

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Amrita Pati

series ordinal

5

object named as

Amrita Pati

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12 August 2017

4

Jennifer Wortman

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12 August 2017

2

Granger Sutton

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12 August 2017

7

Galina Ovchinnikova

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12 August 2017

3

Owen White

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12 August 2017

6

Natalia Mikhailova

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12 August 2017

H James Tripp

1

1 reference

12 August 2017

25 July 2015

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Standards in genomic sciences

12 August 2017

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12 August 2017

10

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12 August 2017

45

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Creative Commons Attribution 4.0 International

12 August 2017

start time

25 July 2015

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC4572445

based on heuristic

inferred from PubMed Central ID database lookup

cites work

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

RefSeq microbial genomes database: new representation and annotation strategy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Proteogenomic analysis of bacteria and archaea: a 46 organism case study

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Proteogenomics to discover the full coding content of genomes: a computational perspective

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Prodigal: prokaryotic gene recognition and translation initiation site identification

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Validating divergent ORF annotation of the Mycobacterium leprae genome through a full translation data set and peptide identification by tandem mass spectrometry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Identifying bacterial genes and endosymbiont DNA with Glimmer

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Improving gene annotation using peptide mass spectrometry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

Heterocyst pattern formation controlled by a diffusible peptide

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4572445

10.1186/S40793-015-0034-9

23 September 2018

Identifiers

DOI

1 reference

PMC publication ID

4572445

Dimensions Publication ID

12 August 2017

0 references

1 reference

PMC publication ID

4572445

12 August 2017

PubMed publication ID

26380633

1 reference

PMC publication ID

4572445