Alternative splicing: a potential source of functional innovation in the eukaryotic genome (Q36090387)

12 August 2017

Alternative splicing: a potential source of functional innovation in the eukaryotic genome (English)

1 reference

alternative mRNA splicing, via spliceosome

12 August 2017

1 reference

Lu Chen

1

0 references

Araxi O. Urrutia

object named as

Araxi O Urrutia

series ordinal

3

0 references

author name string

Jaime M Tovar-Corona

series ordinal

2

1 reference

PMC publication ID

3395134

12 August 2017

language of work or name

1 reference

2 July 2012

1 reference

International journal of evolutionary biology

12 August 2017

1 reference

12 August 2017

2012

1 reference

12 August 2017

596274

1 reference

Creative Commons Attribution 3.0 Unported

12 August 2017

start time

2 July 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

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CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

2 October 2017

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Next-generation transcriptome assembly

2 October 2017

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Increased levels of noisy splicing in cancers, but not for oncogene-derived transcripts

2 October 2017

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The origins, evolution, and functional potential of alternative splicing in vertebrates

2 October 2017

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More than a splicing code: integrating the role of RNA, chromatin and non-coding RNA in alternative splicing regulation.

2 October 2017

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Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster.

2 October 2017

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Epigenetics in alternative pre-mRNA splicing

2 October 2017

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RNA sequencing: advances, challenges and opportunities

2 October 2017

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The developmental transcriptome of Drosophila melanogaster

2 October 2017

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Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication

2 October 2017

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Noisy splicing drives mRNA isoform diversity in human cells.

2 October 2017

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De novo assembly and analysis of RNA-seq data.

2 October 2017

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Did genetic drift drive increases in genome complexity?

2 October 2017

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Next-generation genomics: an integrative approach

2 October 2017

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Deciphering the splicing code

2 October 2017

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Regulation of alternative splicing by histone modifications

2 October 2017

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Expansion of the eukaryotic proteome by alternative splicing

2 October 2017

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Sex-specific and lineage-specific alternative splicing in primates

2 October 2017

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Genome-wide mapping of alternative splicing in Arabidopsis thaliana

2 October 2017

1 reference

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Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches

2 October 2017

1 reference

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Noisy splicing, more than expression regulation, explains why some exons are subject to nonsense-mediated mRNA decay

2 October 2017

1 reference

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AspAlt: A tool for inter-database, inter-genomic and user-specific comparative analysis of alternative transcription and alternative splicing in 46 eukaryotes

2 October 2017

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Tissue-specific genetic control of splicing: implications for the study of complex traits

2 October 2017

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Quantitative regulation of alternative splicing in evolution and development

2 October 2017

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ASTD: The Alternative Splicing and Transcript Diversity database

2 October 2017

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RNA-Seq: a revolutionary tool for transcriptomics

2 October 2017

1 reference

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

2 October 2017

1 reference

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Alternative isoform regulation in human tissue transcriptomes

2 October 2017

1 reference

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Width of gene expression profile drives alternative splicing

2 October 2017

1 reference

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Database resources of the National Center for Biotechnology Information

2 October 2017

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

2 October 2017

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Characterization of paralogous protein families in rice

2 October 2017

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Alternative splicing: current perspectives

2 October 2017

1 reference

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Insights into the connection between cancer and alternative splicing

2 October 2017

1 reference

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Alternative splicing, gene duplication and connectivity in the genetic interaction network of the nematode worm Caenorhabditis elegans

2 October 2017

1 reference

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Splicing in disease: disruption of the splicing code and the decoding machinery

2 October 2017

1 reference

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Comparative genomics and evolution of alternative splicing: the pessimists' science.

2 October 2017

1 reference

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Alternative splicing in cancer: noise, functional, or systematic?

2 October 2017

1 reference

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The (in)dependence of alternative splicing and gene duplication

2 October 2017

1 reference

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Different levels of alternative splicing among eukaryotes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

ECgene: an alternative splicing database update

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

A hitchhiker's guide to expressed sequence tag (EST) analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Genomewide comparative analysis of alternative splicing in plants

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Unbalanced alternative splicing and its significance in cancer

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Regulation of gene expression by alternative untranslated regions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Two rounds of whole genome duplication in the ancestral vertebrate

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Are splicing mutations the most frequent cause of hereditary disease?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Function of alternative splicing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

How did alternative splicing evolve?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Splice variants as cancer biomarkers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Improved prediction of signal peptides: SignalP 3.0

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

The Pfam protein families database

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

The origin of new genes: glimpses from the young and old

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

The origins of genome complexity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Conservation of human alternative splice events in mouse

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Selecting for functional alternative splices in ESTs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Subfunctionalization of duplicate mitf genes associated with differential degeneration of alternative exons in fish

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Iris hypoplasia in mice that lack the alternatively spliced Pax6(5a) isoform

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Alternative splicing and genome complexity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

InterProScan--an integration platform for the signature-recognition methods in InterPro

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Duplicate mitf genes in zebrafish: complementary expression and conservation of melanogenic potential

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Initial sequencing and analysis of the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

The Sequence of the Human Genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Alternative splicing: increasing diversity in the proteomic world

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

PAX3 gene structure, alternative splicing and evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

dbEST--database for "expressed sequence tags"

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Two mRNAs can be produced from a single immunoglobulin mu gene by alternative RNA processing pathways

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Synthesis of secreted and membrane-bound immunoglobulin mu heavy chains is directed by mRNAs that differ at their 3' ends

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

An amazing sequence arrangement at the 5' ends of adenovirus 2 messenger RNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Spliced segments at the 5′ terminus of adenovirus 2 late mRNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Alternative splicing: regulation without regulators

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Dynamic regulation of alternative splicing by silencers that modulate 5' splice site competition

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

The evolutionary relationship between gene duplication and alternative splicing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

BLUEPRINT to decode the epigenetic signature written in blood.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Alternative splicing in development and function of chordate endocrine systems: a focus on Pax genes.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Spatiotemporal expression of Pax genes in amphioxus: Insights into Pax-related organogenesis and evolution

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Evolution of alternative splicing after gene duplication

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Tissue-specific alternative splicing of ascidian troponin I isoforms. Redesign of a protein isoform-generating mechanism during chordate evolution

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395134

Duplication, degeneration and subfunctionalization of the nested synapsin–Timp genes in Fugu

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1155%2F2012%2F596274

Widespread Evolutionary Conservation of Alternatively Spliced Exons in Caenorhabditis

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1155%2F2012%2F596274

Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22811948

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The Evolution of Alternative Splicing in the Pax Family: The View from the Basal Chordate Amphioxus

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22811948

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Alternative splicing of conserved exons is frequently species-specific in human and mouse

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22811948

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1155/2012/596274

1 reference

12 August 2017

1 reference

PMC publication ID

3395134

12 August 2017

PubMed publication ID

22811948

1 reference

PMC publication ID

3395134