Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model. (Q36115141)

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English	Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model.	scientific article

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21 March 2020

Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model (English)

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Martin Peralta-Gil

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Patricia Oliver

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María-Luisa Tabche

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27 August 2016

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21 March 2020

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.

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2 October 2017

The LysR-type PcaQ protein regulates expression of a protocatechuate-inducible ABC-type transport system in Sinorhizobium meliloti

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2 October 2017

GcvA interacts with both the alpha and sigma subunits of RNA polymerase to activate the Escherichia coli gcvB gene and the gcvTHP operon

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Mutations in the occQ operator that decrease OccR-induced DNA bending do not cause constitutive promoter activity

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DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide

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The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli

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A novel mechanism for upregulation of the Escherichia coli K-12 hmp (flavohaemoglobin) gene by the 'NO releaser', S-nitrosoglutathione: nitrosation of homocysteine and modulation of MetR binding to the glyA-hmp intergenic region.

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2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

DNase I footprinting, DNA bending and in vitro transcription analyses of ClcR and CatR interactions with the clcABD promoter: evidence of a conserved transcriptional activation mechanism.

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2 July 2018

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2 July 2018

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23 September 2018

Binding site determinants for the LysR-type transcriptional regulator PcaQ in the legume endosymbiont Sinorhizobium meliloti

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23 September 2018

Transcriptional responses of Escherichia coli to S-nitrosoglutathione under defined chemostat conditions reveal major changes in methionine biosynthesis

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23 September 2018

Critical nucleotides in the interaction of a LysR-type regulator with its target promoter region. catBC promoter activation by CatR.

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23 September 2018

Regulation of diaminopimelate decarboxylase synthesis in Escherichia coli. III. Nucleotide sequence and regulation of the lysR gene.

1 reference

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23 September 2018

Regulation of diaminopimelate decarboxylase synthesis in Escherichia coli. II. Nucleotide sequence of the lysA gene and its regulatory region.

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21 January 2018

Regulation of diaminopimelate decarboxylase synthesis in Escherichia coli. I. Identification of a lysR gene encoding an activator of the lysA gene

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High angle and ligand-induced low angle DNA bends incited by OccR lie in the same plane with OccR bound to the interior angle

1 reference

https://pubmed.ncbi.nlm.nih.gov/27567672

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GcvA binding site 1 in the gcvTHP promoter of Escherichia coli is required for GcvA-mediated repression but not for GcvA-mediated activation

1 reference

https://pubmed.ncbi.nlm.nih.gov/27567672

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cooperative MetR binding in the Escherichia coli glyA control region

1 reference

https://pubmed.ncbi.nlm.nih.gov/27567672

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic analysis of the GcvA binding site in the gcvA control region

1 reference

https://pubmed.ncbi.nlm.nih.gov/27567672

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The sixty nucleotide OccR operator contains a subsite essential and sufficient for OccR binding and a second subsite required for ligand-responsive DNA bending

1 reference

https://pubmed.ncbi.nlm.nih.gov/27567672

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12864-016-3025-3

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21 March 2020

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24 November 2022

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21 March 2020

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