Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&amp;T-seq (Q36148292)

12 August 2017

Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq (English)

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12 August 2017

Iain C Macaulay

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Wilfried Haerty

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Wilfried Haerty

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Thierry Voet

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Thierry Voet

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12 August 2017

Mabel J Teng

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12 August 2017

Parveen Kumar

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12 August 2017

Chris P Ponting

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12 August 2017

29 September 2016

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12 August 2017

2081-2103

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https://scigraph.springernature.com/pub.10.1038/nprot.2016.138

12 August 2017

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cites work

Single-cell sequencing-based technologies will revolutionize whole-organism science

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The technology and biology of single-cell RNA sequencing

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Tumour evolution inferred by single-cell sequencing

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Clonal evolution in breast cancer revealed by single nucleus genome sequencing.

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Single-cell paired-end genome sequencing reveals structural variation per cell cycle

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Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain

21 January 2018

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Cell lineage analysis in human brain using endogenous retroelements.

21 January 2018

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Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm

21 January 2018

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Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor

21 January 2018

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A quantitative comparison of single-cell whole genome amplification methods

21 January 2018

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Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing

21 January 2018

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Single-Cell Whole-Genome Amplification and Sequencing: Methodology and Applications

21 January 2018

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Direct, genome-wide assessment of DNA mutations in single cells.

21 January 2018

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Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Genome-wide detection of single-nucleotide and copy-number variations of a single human cell

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Single cell genomics: advances and future perspectives

21 January 2018

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CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Highly multiplexed and strand-specific single-cell RNA 5' end sequencing.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

mRNA-Seq whole-transcriptome analysis of a single cell

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Full-length RNA-seq from single cells using Smart-seq2.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Two methods for full-length RNA sequencing for low quantities of cells and single cells

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Chromosome instability is common in human cleavage-stage embryos.

21 January 2018

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Integrated genome and transcriptome sequencing of the same cell

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Single-cell transcriptogenomics reveals transcriptional exclusion of ENU-mutated alleles

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Co-detection and sequencing of genes and transcripts from the same single cells facilitated by a microfluidics platform

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Synthetic spike-in standards for RNA-seq experiments

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Fast and accurate long-read alignment with Burrows-Wheeler transform

21 January 2018

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The Sequence Alignment/Map format and SAMtools

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Interactive analysis and assessment of single-cell copy-number variations

21 January 2018

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Circos: an information aesthetic for comparative genomics

21 January 2018

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HTSeq--a Python framework to work with high-throughput sequencing data

21 January 2018

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Optimizing sparse sequencing of single cells for highly multiplex copy number profiling

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Genome-wide copy number analysis of single cells.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Copynumber: Efficient algorithms for single- and multi-track copy number segmentation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

Single-cell, genome-wide sequencing identifies clonal somatic copy-number variation in the human brain

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

A framework for variation discovery and genotyping using next-generation DNA sequencing data

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

The International HapMap Project

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

A global reference for human genetic variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.138

SNES: single nucleus exome sequencing

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

BEDTools: The Swiss-Army Tool for Genome Feature Analysis.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNPROT.2016.138

31 March 2020

Identifiers

DOI

10.1038/NPROT.2016.138

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Dimensions Publication ID

12 August 2017

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