Phylogenetic tree construction using trinucleotide usage profile (TUP). (Q36170286)

12 August 2017

Phylogenetic tree construction using trinucleotide usage profile (TUP). (English)

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12 August 2017

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1 reference

Si Chen

1

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12 August 2017

Lih-Yuan Deng

2

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12 August 2017

Dale Bowman

3

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12 August 2017

Jyh-Jen Horng Shiau

4

1 reference

12 August 2017

Tit-Yee Wong

5

1 reference

12 August 2017

Behrouz Madahian

6

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12 August 2017

Henry Horng-Shing Lu

7

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12 August 2017

6 October 2016

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12 August 2017

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12 August 2017

17

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12 August 2017

Suppl 13

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12 August 2017

381

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Bacterial phylogenetic tree construction based on genomic translation stop signals

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Intergenic sequence comparison of Escherichia coli isolates reveals lifestyle adaptations but not host specificity.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Fuzzy species among recombinogenic bacteria

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Prokaryote phylogeny without sequence alignment: from avoidance signature to composition distance

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Local homology recognition and distance measures in linear time using compressed amino acid alphabets

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Alignment-free sequence comparison-a review

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Calibrating bacterial evolution

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Classification of Rickettsia tsutsugamushi in a new genus, Orientia gen. nov., as Orientia tsutsugamushi comb. nov

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

A general method applicable to the search for similarities in the amino acid sequence of two proteins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

A measure of the similarity of sets of sequences not requiring sequence alignment

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Historical perspectives and identification of Neisseria and related species

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

A sub-cubic time algorithm for computing the quartet distance between two general trees

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Optimal word sizes for dissimilarity measures and estimation of the degree of dissimilarity between DNA sequences

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

The phylogeny of the genus Yersinia based on 16S rDNA sequences

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Average values of a dissimilarity measure not requiring sequence alignment are twice the averages of conventional mismatch counts requiring sequence alignment for a computer-generated model system

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

On the taxonomic status of the intracellular bacterium Wolbachia pipientis: should this species name include the intracellular bacteria of filarial nematodes?

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Metrics for comparing regulatory sequences on the basis of pattern counts.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

The Evolutionary History of Shigella and Enteroinvasive Escherichia coli Revised

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

A measure of DNA sequence dissimilarity based on Mahalanobis distance between frequencies of words.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5073869

Indexing by latent semantic analysis

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-016-1222-3

The Comparison of Dendrograms by Objective Methods

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-016-1222-3

The phylogeny of the genusYersiniabased on 16S rDNA sequences

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-016-1222-3

10.1186/S12859-016-1222-3

21 January 2018

Identifiers

DOI

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journals/bmcbi/ChenDBSWML16

12 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

12 August 2017

PubMed publication ID

27766939

1 reference