Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys (Q36185156)

12 August 2017

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys (English)

1 reference

12 August 2017

Janet K Jansson

8

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Rob Knight

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12

object named as

Rob Knight

1 reference

12 August 2017

9

J Gregory Caporaso

1 reference

12 August 2017

4

Gail Ackermann

1 reference

12 August 2017

5

Greg Humphrey

1 reference

12 August 2017

7

Jack A Gilbert

1 reference

12 August 2017

1

William Walters

1 reference

12 August 2017

2

Embriette R Hyde

1 reference

12 August 2017

10

Jed A Fuhrman

1 reference

12 August 2017

Donna Berg-Lyons

3

1 reference

12 August 2017

Alma Parada

series ordinal

6

1 reference

12 August 2017

Amy Apprill

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11

1 reference

12 August 2017

language of work or name

1 reference

22 December 2015

1 reference

full work available at URL

12 August 2017

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5069754

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published in

mSystems

1 reference

12 August 2017

1

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12 August 2017

1

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Microbial community assembly and metabolic function during mammalian corpse decomposition.

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

Sequence depth, not PCR replication, improves ecological inference from next generation DNA sequencing

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

Temporal variability in soil microbial communities across land-use types

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

QIIME allows analysis of high-throughput community sequencing data

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

SAR11 clade dominates ocean surface bacterioplankton communities.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

ITS primers with enhanced specificity for basidiomycetes--application to the identification of mycorrhizae and rusts

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5069754

10.1128/MSYSTEMS.00009-15

5 December 2018

Identifiers

DOI

0 references

1 reference

12 August 2017

PubMed publication ID

27822518

1 reference