Indel-tolerant read mapping with trinucleotide frequencies using cache-oblivious kd-trees (Q36218025)

12 August 2017

Indel-tolerant read mapping with trinucleotide frequencies using cache-oblivious kd-trees (English)

1 reference

12 August 2017

John Wiedenhoeft

2

0 references

Alexander Schliep

object named as

Alexander Schliep

series ordinal

3

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author name string

Md Pavel Mahmud

series ordinal

1

1 reference

PMCID

3436807

12 August 2017

language of work or name

English

0 references

publication date

1 September 2012

1 reference

12 August 2017

1 reference

12 August 2017

28

1 reference

12 August 2017

18

1 reference

12 August 2017

i325-i332

1 reference

Creative Commons Attribution 3.0 Unported

12 August 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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New powerful statistics for alignment-free sequence comparison under a pattern transfer model

1 October 2017

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Genome structural variation discovery and genotyping

1 October 2017

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A map of human genome variation from population-scale sequencing

1 October 2017

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Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

1 October 2017

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mrsFAST: a cache-oblivious algorithm for short-read mapping.

1 October 2017

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Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

1 October 2017

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A survey of sequence alignment algorithms for next-generation sequencing

1 October 2017

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High quality SNP calling using Illumina data at shallow coverage.

1 October 2017

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Incorporating sequence quality data into alignment improves DNA read mapping

1 October 2017

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Alignment-free sequence comparison (I): statistics and power

1 October 2017

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Personalized copy number and segmental duplication maps using next-generation sequencing.

1 October 2017

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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

1 October 2017

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SOAP2: an improved ultrafast tool for short read alignment

1 October 2017

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Fast and accurate short read alignment with Burrows-Wheeler transform

1 October 2017

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 October 2017

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PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data

1 October 2017

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A haplotype map of the human genome

1 October 2017

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SSAHA: a fast search method for large DNA databases

1 October 2017

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Base-calling of automated sequencer traces using phred. II. Error probabilities

1 October 2017

1 reference

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Alignment-free sequence comparison (II): theoretical power of comparison statistics

1 October 2017

1 reference

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RazerS--fast read mapping with sensitivity control

29 June 2018

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Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

29 June 2018

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Base-calling of automated sequencer traces using phred. I. Accuracy assessment

29 June 2018

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Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detection.

21 January 2018

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MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions

21 January 2018

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A fast bit-vector algorithm for approximate string matching based on dynamic programming

21 January 2018

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A guided tour to approximate string matching

21 January 2018

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The spectrum kernel: a string kernel for SVM protein classification.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436807

Estimation of bacterial species phylogeny through oligonucleotide frequency distances

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22962448

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTS380

1 reference

journals/bioinformatics/MahmudWS12

12 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

12 August 2017

1 reference

PMCID

3436807