DNA breathing dynamics distinguish binding from nonbinding consensus sites for transcription factor YY1 in cells (Q36368758)

13 August 2017

DNA breathing dynamics distinguish binding from nonbinding consensus sites for transcription factor YY1 in cells (English)

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13 August 2017

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7

Alan R Bishop

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13 August 2017

1

Boian S Alexandrov

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13 August 2017

6

Kim Ø Rasmussen

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13 August 2017

Yayoi Fukuyo

2

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13 August 2017

Martin Lange

3

1 reference

13 August 2017

Nobuo Horikoshi

4

1 reference

13 August 2017

Vladimir Gelev

5

1 reference

13 August 2017

Anny Usheva

8

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13 August 2017

language of work or name

English

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publication date

16 August 2012

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13 August 2017

Nucleic Acids Research

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13 August 2017

40

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13 August 2017

20

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13 August 2017

10116-10123

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Creative Commons Attribution-NonCommercial 3.0 Unported

13 August 2017

start time

7 November 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Promoter polymorphisms in two overlapping 6p25 genes implicate mitochondrial proteins in cognitive deficit in schizophrenia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Nucleosome-mediated cooperativity between transcription factors

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Variation in transcription factor binding among humans

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Inherited variation in gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Toward a detailed description of the thermally induced dynamics of the core promoter

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

A nonlinear dynamic model of DNA with a sequence-dependent stacking term

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Profiling the thermodynamic softness of adenoviral promoters

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Protein-DNA recognition patterns and predictions.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Assessing computational tools for the discovery of transcription factor binding sites

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Rapid spontaneous accessibility of nucleosomal DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

The functions of plasminogen in cardiovascular disease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Collaborative competition mechanism for gene activation in vivo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

YY1 transcriptional initiator: protein interactions and association with a DNA site containing unpaired strands

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

TATA-binding protein-independent initiation: YY1, TFIIB, and RNA polymerase II direct basal transcription on supercoiled template DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Sequence sensitivity of breathing dynamics in heteropolymer DNA.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

DNA sequence and structure: direct and indirect recognition in protein-DNA binding

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488223

Statistical mechanics of a nonlinear model for DNA denaturation

21 September 2018

1 reference

12 December 2020

Phase transitions in one dimension and the helix-coil transition in polyamino acids

1 reference

12 December 2020

Nonlinear dynamics in a double-chain model of DNA

1 reference

12 December 2020

Bubble statistics and dynamics in double-stranded DNA

1 reference

12 December 2020

Dynamics and thermodynamics of a nonlinear model for DNA denaturation

1 reference

12 December 2020

Entropy-driven DNA denaturation

1 reference

12 December 2020

Bubble statistics and positioning in superhelically stressed DNA

1 reference

12 December 2020

Supercoiling induces denaturation bubbles in circular DNA

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKS758

1 reference

13 August 2017

1 reference

13 August 2017

PubMed publication ID

22904068

1 reference