Shotgun protein sequencing with meta-contig assembly (Q36386724)

13 August 2017

Shotgun protein sequencing with meta-contig assembly (English)

1 reference

13 August 2017

1 reference

3

Nuno Bandeira

1 reference

13 August 2017

Adrian Guthals

1

1 reference

PMC publication ID

3494147

13 August 2017

Karl R Clauser

series ordinal

2

1 reference

13 August 2017

13 July 2012

1 reference

Molecular & Cellular Proteomics

13 August 2017

1 reference

13 August 2017

11

1 reference

13 August 2017

10

1 reference

13 August 2017

1084-1096

1 reference

The expanding horizons of asparagine-linked glycosylation

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Template proteogenomics: sequencing whole proteins using an imperfect database

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

TagRecon: high-throughput mutation identification through sequence tagging

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

The ABRF Edman Sequencing Research Group 2008 Study: investigation into homopolymeric amino acid N-terminal sequence tags and their effects on automated Edman degradation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Discovery and revision of Arabidopsis genes by proteogenomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Clustering millions of tandem mass spectra

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Monoclonal antibody "gold rush".

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Protein identification by spectral networks analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Molecular mechanisms of antibody somatic hypermutation.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

MODi: a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Recombinant polyclonal antibodies: the next generation of antibody therapeutics?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

PepNovo: de novo peptide sequencing via probabilistic network modeling

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Functional assignment of the 20 S proteasome from Trypanosoma brucei using mass spectrometry and new bioinformatics approaches.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Probability-based protein identification by searching sequence databases using mass spectrometry data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Sequence database searches via de novo peptide sequencing by tandem mass spectrometry

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Systematic isolation of peptide signal molecules regulating development in hydra: LWamide and PW families

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Error-tolerant identification of peptides in sequence databases by peptide sequence tags

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Automated de novo protein sequencing of monoclonal antibodies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Shotgun protein sequencing: assembly of peptide tandem mass spectra from mixtures of modified proteins.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

De novo peptide sequencing and identification with precision mass spectrometry

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

Identification of post-translational modifications by blind search of mass spectra.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

De novo peptide sequencing via tandem mass spectrometry

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494147

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

28 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015768

pNovo: de novo peptide sequencing and identification using HCD spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015768

Shotgun protein sequencing by tandem mass spectra assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015768

Peptide sequence tags for fast database search in mass-spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015768

The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015768

SPIDER: software for protein identification from sequence tags with de novo sequencing error.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015768

Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015768

Mutation-tolerant protein identification by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015768

Distributions of ion series in ETD and CID spectra: making a comparison.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015768

The primary structure of thioredoxin from Chromatium vinosum determined by high-performance tandem mass spectrometry

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22798278

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of protein modifications using MS/MS de novo sequencing and the OpenSea alignment algorithm

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22798278

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The pros and cons of peptide-centric proteomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22798278

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.M111.015768

1 reference

13 August 2017

1 reference

PMC publication ID

3494147

13 August 2017

PubMed publication ID

22798278

1 reference

PMC publication ID

3494147